View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_11 (Length: 259)
Name: NF11647_low_11
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 36955030 - 36955264
Alignment:
| Q |
19 |
gatcaaacaaataacccgacccatcaccatctccaaatttaacagacccatcagcttcctgagccacaaccttatacttcaacctcaaagtctcatactt |
118 |
Q |
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| T |
36955030 |
gatcaaacaaataacccgacccatcaccatctccaaatttaacagacccatcagcttcctgagccacaaccttatacttcaacctcaaagtctcatacct |
36955129 |
T |
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| Q |
119 |
aaccttcccaaatctcctaacagcattatacatactctcttccgtttgatactcagggataatatggtaatacattatctcctccggtgaacccggttca |
218 |
Q |
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| T |
36955130 |
aaccttcccaaatctcctaacagcattatacatactctcttccgtttgatactcagggataatatggtaatacattatctcctccggtgaacccggttca |
36955229 |
T |
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| Q |
219 |
cttaactcctccgtcgttaacttcgcctttgcttc |
253 |
Q |
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| T |
36955230 |
cttaactcctccgtcgttaacttcgccattgcttc |
36955264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 17749255 - 17749035
Alignment:
| Q |
21 |
tcaaacaaataacccgacccatcaccatctccaaatttaacagacccatcagcttcctgagccacaaccttatacttcaacctcaaagtctcatacttaa |
120 |
Q |
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| T |
17749255 |
tcaaacaaatatgccgaaccatcaccatgcccgaatttaaccgacccatcagcttcttcagcatcaaccttatgaggcaatctcaaagtatcatacctca |
17749156 |
T |
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| Q |
121 |
ccttcccaaatctcctaacagcattatacatactctcttccgtttgatactcagggataatatggtaatacattatctcctccggtgaacccggttcact |
220 |
Q |
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| T |
17749155 |
ccttcccaaatcttctaacagcattatacatactctcttcagtttgatactcaggaatcaaatgatagtacataatttgttccggtgaacccggttcact |
17749056 |
T |
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| Q |
221 |
taactcctccgtcgttaactt |
241 |
Q |
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| T |
17749055 |
caattggtccgttgttaactt |
17749035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 43480142 - 43480308
Alignment:
| Q |
51 |
ccaaatttaacagacccatcagcttcctgagccacaaccttatacttcaacctcaaagtctcatacttaaccttcccaaatctcctaacagcattataca |
150 |
Q |
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| T |
43480142 |
ccaaatttaacagaaccgtcagattcctgagcaacaaccttatggggcaaacgcaacgtatcataactaattttcccaaatcttctaacggcgttataca |
43480241 |
T |
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| Q |
151 |
tactctcttccgtttgatactcagggataatatggtaatacattatctcctccggtgaacccggttc |
217 |
Q |
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||||||| || |||||||||||||| || ||||| || || || |||| ||||||| ||| ||||| |
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| T |
43480242 |
tactctcctcagtttgatactcaggaattatatgatagtatataatctgttccggtgcacctggttc |
43480308 |
T |
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