View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_12 (Length: 248)
Name: NF11647_low_12
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 5493651 - 5493404
Alignment:
| Q |
1 |
aaacattccgccggcgatgtcgtcggaagaagattccgatgaagaaagtaacgaaacagcgttccattcgccgcagaattcttcagtaagtcaggaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5493651 |
aaacattccgccggcgatgtcgtcggaagaagattccgatgaagaaagtaacgaaacagcgttccattcgccgcagaattcttcagtaagtcaggaagat |
5493552 |
T |
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| Q |
101 |
ggattttacacgccgtattcagtttcacggcagagttctctcagtaacggtagtccggcgaaaaaagagagtaattcgacggttacgccgcttccgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
5493551 |
ggattttacacgccgtattcagtttcacggcagagttctctcagtaacggtagtccggcgaagaaagagagtaattcgacggttacgccgcttcctaaat |
5493452 |
T |
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| Q |
201 |
cgaagagaacttcaccgaaatcgaaatctgctctttctgcttcttctc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5493451 |
cgaagagaacttcaccgaaatcgaaatctgctctttctgcttcttctc |
5493404 |
T |
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