View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_13 (Length: 248)
Name: NF11647_low_13
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 47079806 - 47079571
Alignment:
| Q |
1 |
gccaaacaagctgttggaggtgttaatgctcaaactggaaccgctaacaataacaatgacgcagtcgatttcttctacactgctcaaggttttcaaccat |
100 |
Q |
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| T |
47079806 |
gccaaacaagctgtcggaggtgttaatgctcaaactggaaccactaacaataacaatgacgccgtcgatttcttctacaccgctcaaggttttcaaccat |
47079707 |
T |
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| Q |
101 |
tgttcacgcaagttgaggtaccaaccatttctaattcatcatcatcgttatcaccgttactgctgatacagattattttgcaaatgtttacaccaatatt |
200 |
Q |
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| T |
47079706 |
tgttcacgcatgttgaggtaccaaccatttctaattcatcatcatcgttatcactgttactgctgatacagattgttttgcaaatgtttacaccaatatt |
47079607 |
T |
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| Q |
201 |
tcaaattttggactaaatattgtgtgtttttgattc |
236 |
Q |
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| T |
47079606 |
ttaaattttggactaaatattgtgtgtttttgattc |
47079571 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 18227879 - 18227928
Alignment:
| Q |
55 |
aatgacgcagtcgatttcttctacactgctcaaggttttcaaccattgtt |
104 |
Q |
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| T |
18227879 |
aatgacgccgttgatttcttctacaccgcgcaaggttttcagccattgtt |
18227928 |
T |
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