View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_16 (Length: 241)
Name: NF11647_low_16
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 31505296 - 31505508
Alignment:
| Q |
18 |
ctttttaactaaggtttaaatttgatttcacccgacaacttgaataagaatttgctactgaaatagcaaccacttctgtccaatgttgcctacgtaatta |
117 |
Q |
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| T |
31505296 |
ctttttaactaaggtttaaatttgatttcacccgacaacttgaataagaatttgctactgaaatagcaaccacttctgtccaatgttgcctacgtaatta |
31505395 |
T |
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| Q |
118 |
taataataaaattattacaatcatgtatatgaacaaaaatcatgtgtatgataaatgtatctttaaagattttcttatgtattatggacagacttaatta |
217 |
Q |
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| T |
31505396 |
taataataaaattattacaatcatgtatatgaacaaaaatcatgtgtatgataaatgtatctttaaacattttcttatgtattatggacagacttaatta |
31505495 |
T |
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| Q |
218 |
tatgtgtcctatg |
230 |
Q |
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| T |
31505496 |
tatgtgtcctatg |
31505508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 31480408 - 31480517
Alignment:
| Q |
38 |
tttgatttcacccgacaacttgaat-aagaatttgctactgaaatagcaaccacttctgtccaatgttgcctacgtaattataataataaaattattaca |
136 |
Q |
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|||||||||| |||| ||||||||| |||||| | ||||||||||||||||||||| || ||||||||||| | |||| ||||| |||||||| | || |
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| T |
31480408 |
tttgatttcatccgaaaacttgaatcaagaatctactactgaaatagcaaccacttttgctcaatgttgcctgcataataataat--taaaattaattca |
31480505 |
T |
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| Q |
137 |
atcatgtatatg |
148 |
Q |
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| T |
31480506 |
atcttgtatatg |
31480517 |
T |
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