View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11647_low_19 (Length: 226)

Name: NF11647_low_19
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11647_low_19
NF11647_low_19
[»] chr6 (5 HSPs)
chr6 (1-207)||(17590433-17590639)
chr6 (37-67)||(6419871-6419901)
chr6 (15-61)||(29284836-29284882)
chr6 (15-67)||(12201754-12201805)
chr6 (15-67)||(12481361-12481413)
[»] chr8 (2 HSPs)
chr8 (15-65)||(32726519-32726569)
chr8 (15-67)||(10338821-10338873)
[»] chr7 (3 HSPs)
chr7 (15-67)||(23371005-23371057)
chr7 (15-67)||(10094519-10094571)
chr7 (15-67)||(10574459-10574511)
[»] chr3 (5 HSPs)
chr3 (16-67)||(4219258-4219308)
chr3 (37-67)||(2147805-2147835)
chr3 (37-67)||(11819161-11819191)
chr3 (38-67)||(13701994-13702023)
chr3 (15-67)||(48652439-48652491)
[»] chr1 (6 HSPs)
chr1 (2-61)||(24114657-24114716)
chr1 (16-67)||(50107907-50107957)
chr1 (15-61)||(10782585-10782631)
chr1 (37-67)||(37822358-37822388)
chr1 (15-67)||(12871699-12871751)
chr1 (15-67)||(45750556-45750608)
[»] chr5 (2 HSPs)
chr5 (37-67)||(7771834-7771864)
chr5 (37-67)||(42396525-42396555)
[»] chr2 (2 HSPs)
chr2 (37-67)||(5754366-5754396)
chr2 (35-67)||(41797672-41797704)
[»] scaffold0294 (1 HSPs)
scaffold0294 (15-67)||(4058-4110)
[»] chr4 (4 HSPs)
chr4 (15-67)||(7060402-7060454)
chr4 (37-65)||(7861219-7861247)
chr4 (15-67)||(24825727-24825779)
chr4 (37-65)||(42197634-42197662)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 17590639 - 17590433
Alignment:
Q  1 aaaagatgagataacaaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaagagaaagatgcatacacgtggaaatcacttattta 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17590639 aaaagatgagatatcaaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaagagaaagatgcatacaggtggaaatcacttattta 17590540  T
Q  101 ataatatttaggaaatatgtacgagtaatcttttctttaactcacatgaacaaaatagattacgtttctgatccttaaaattttaatttttcgccagatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |    
T  17590539 ataatatttaggaaatatgtacgagtaatcttttctttaactcacatgaacaaaatagatttcgtttctgatccttaaaattttaatttttcgctagacg 17590440  T
Q  201 ttgtgac 207  Q
    |||||||    
T  17590439 ttgtgac 17590433  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 6419871 - 6419901
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||||||||    
T  6419871 agacgacgaaatcacaaaaacaaatgaaaga 6419901  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 29284882 - 29284836
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaat 61  Q
    ||||| ||||||| |||||  ||||||||||||||||||||||||||    
T  29284882 caaaacaaacaaagtcgtgcaaagacgacgaaatcacaaaaacaaat 29284836  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 12201805 - 12201754
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||||||||||||  ||||| |||||||||||||||| ||||||    
T  12201805 caaaataaacaaaatcgtgttat-acgacaaaatcacaaaaacaaaggaaaga 12201754  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 12481361 - 12481413
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||| |||| |  |||||||||||||||||||||||| ||||||    
T  12481361 caaaacaaacaaagtcgtttagagacgacgaaatcacaaaaacaaacgaaaga 12481413  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 32726569 - 32726519
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaa 65  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  32726569 caaaagaaacaaaattgtgttaagacggcgaaatcacataaacaaatgaaa 32726519  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 10338821 - 10338873
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||| ||||   ||||||||||||||||||||||||| ||||||    
T  10338821 caaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaaga 10338873  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 23371005 - 23371057
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| || ||||||||||||||||||| ||||||||  ||||||||||||||    
T  23371005 caaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaaga 23371057  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 10094571 - 10094519
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||| ||||   ||||||||||||||||||||||||| ||||||    
T  10094571 caaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaaga 10094519  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 10574511 - 10574459
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||| ||||   ||||||||||||||||||||||||| ||||||    
T  10574511 caaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaaga 10574459  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 4219308 - 4219258
Alignment:
Q  16 aaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  4219308 aaaataaacaaaatcgtgtta-gacgacgaaatcataaaaacaaacgaaaga 4219258  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 2147835 - 2147805
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||||||||    
T  2147835 agacgacgaaatcacaaaaacaaatgaaaga 2147805  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 11819191 - 11819161
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||||||||    
T  11819191 agacgacgaaatcacaaaaacaaatgaaaga 11819161  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 13701994 - 13702023
Alignment:
Q  38 gacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||||||||||||||||||||||||||||    
T  13701994 gacgacgaaatcacaaaaacaaatgaaaga 13702023  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 48652439 - 48652491
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||| |||| |  |||||||||||||||||||||||| ||||||    
T  48652439 caaaacaaacaaagtcgtttagagacgacgaaatcacaaaaacaaacgaaaga 48652491  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 24114657 - 24114716
Alignment:
Q  2 aaagatgagataacaaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaat 61  Q
    ||||| |||| | ||||| ||||||| |||||| ||||| ||||||||||||||||||||    
T  24114657 aaagacgagaaatcaaaacaaacaaagtcgtgtaaagacaacgaaatcacaaaaacaaat 24114716  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 50107907 - 50107957
Alignment:
Q  16 aaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||| |||||||||||||| | ||||||||||||||||||||||| ||||||    
T  50107907 aaaataaacaaaatcgtgtga-gacgacgaaatcacaaaaacaaacgaaaga 50107957  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 10782631 - 10782585
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaat 61  Q
    ||||| |||||||||||||| || | |||||||||||||||||||||    
T  10782631 caaaacaaacaaaatcgtgtaaaaatgacgaaatcacaaaaacaaat 10782585  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 37822358 - 37822388
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||||||||    
T  37822358 agacgacgaaatcacaaaaacaaatgaaaga 37822388  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 12871751 - 12871699
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||| | |||||  ||||||||||||||||||||||||| ||||||    
T  12871751 caaaacaaacagagtcgtgcaaagacgacgaaatcacaaaaacaaacgaaaga 12871699  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 45750608 - 45750556
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||| ||||   ||||||||||||||||||||||||| ||||||    
T  45750608 caaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaaga 45750556  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 7771834 - 7771864
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||||||||    
T  7771834 agacgacgaaatcacaaaaacaaatgaaaga 7771864  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 42396525 - 42396555
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||||||||    
T  42396525 agacgacgaaatcacaaaaacaaatgaaaga 42396555  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 5754396 - 5754366
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||||||||    
T  5754396 agacgacgaaatcacaaaaacaaatgaaaga 5754366  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 41797704 - 41797672
Alignment:
Q  35 taagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    |||||||||||||||||||||||||| ||||||    
T  41797704 taagacgacgaaatcacaaaaacaaacgaaaga 41797672  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4058 - 4110
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||||| ||||   ||||||||||||||||||||||||| ||||||    
T  4058 caaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaaga 4110  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 7060454 - 7060402
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||||||||| | ||||   ||||||||||||||||||||||||| ||||||    
T  7060454 caaaagaaacagagtcgttcaaagacgacgaaatcacaaaaacaaacgaaaga 7060402  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 7861219 - 7861247
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaa 65  Q
    |||||||||||||||||||||||||||||    
T  7861219 agacgacgaaatcacaaaaacaaatgaaa 7861247  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 24825779 - 24825727
Alignment:
Q  15 caaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 67  Q
    ||||| ||||| | |||||  ||||||||||||||||||||||||| ||||||    
T  24825779 caaaacaaacagagtcgtgcaaagacgacgaaatcacaaaaacaaacgaaaga 24825727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 42197662 - 42197634
Alignment:
Q  37 agacgacgaaatcacaaaaacaaatgaaa 65  Q
    |||||||||||||||||||||||||||||    
T  42197662 agacgacgaaatcacaaaaacaaatgaaa 42197634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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