View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11647_low_2 (Length: 594)
Name: NF11647_low_2
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_2 |
 | |
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| [»] chr1 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
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|
| [»] scaffold0027 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 44817806 - 44817213
Alignment:
| Q |
1 |
cgaccctcaaaataaatattgatgaccaaaccattaactttgcaggacccactctgtccatgattaatgcccttaatagcattactgtattcactttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
44817806 |
cgaccctcaaaataaatattgatgaccaaaccattaactttgcaggacccactctgtccatgattaatgcccttaatagtattactgtatccactttgtc |
44817707 |
T |
|
| Q |
101 |
cataattgaatctatcccaaatcataacaccaccatatttagcagaacccttaatagcaggaagaacttgagaaatcaaaacatcagaaggaataaaacc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44817706 |
catcattgaatctatcccaaatcataacaccaccatatttagcagaacccttaatagcaggaagaacttgagaaatcaaaacatcagaaggaataaaacc |
44817607 |
T |
|
| Q |
201 |
accacttggagcagcagcatacttagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtg |
300 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44817606 |
accacttggagcggcagcatcattagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtg |
44817507 |
T |
|
| Q |
301 |
tttccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44817506 |
tttccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggt |
44817407 |
T |
|
| Q |
401 |
aaggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44817406 |
aaggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttc |
44817307 |
T |
|
| Q |
501 |
aatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagc |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44817306 |
aatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagc |
44817213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 68 - 592
Target Start/End: Complemental strand, 44835093 - 44834572
Alignment:
| Q |
68 |
tgcccttaatagcattactgtattcactttgtacataattgaatctatcccaaatcataacaccaccatatttagcagaacccttaatagcaggaagaac |
167 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44835093 |
tgcccttaatagcattactgtatccactttgtccatcattgaatctatcccaaatcataacaccaccatatttagcagaacccttaatagcaggaagaac |
44834994 |
T |
|
| Q |
168 |
ttgagaaatcaaaacatcagaaggaataaaaccaccacttggagcagcagcatacttagcaggtacacctaaaaacacttgtttagcttgacttgaagtc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44834993 |
ttgagaaatcaaaacatcagaaggaataaaaccaccacttggagcagcagcatcattagcaggtacacctaaaaacacttgtttagcttgacttgaagtc |
44834894 |
T |
|
| Q |
268 |
cattgattccaagcatcaacaagattgttagtgtttccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccag |
367 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44834893 |
cattgattccaagcattaacaagattgttagtgtttccacttgagtattggcactgaggattattataaaactgaacccacacataatcaaataaaccgg |
44834794 |
T |
|
| Q |
368 |
tcttaatagctgaatccaaatgagcatcagggtaaggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgc |
467 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| |||||| || | ||||| ||||| |||| ||||||| |||| |
|
|
| T |
44834793 |
tattaatagccgaatccaaatgagcatcagggaaaggacattgaggtgctgcagacaagtaaactctcctttgtgagctaaaaccattaagtgctcttgc |
44834694 |
T |
|
| Q |
468 |
aagttcatcccaatattgaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaag |
567 |
Q |
| |
|
||| ||||| ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
44834693 |
aaggtcatc---atagtgttcaccaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaag |
44834597 |
T |
|
| Q |
568 |
aaattgttccataggtagtttgcaa |
592 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
44834596 |
aaattgttccataggtaatttgcaa |
44834572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 580
Target Start/End: Complemental strand, 44838142 - 44838060
Alignment:
| Q |
498 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
580 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44838142 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
44838060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 580
Target Start/End: Complemental strand, 44849229 - 44849147
Alignment:
| Q |
498 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
580 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
44849229 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
44849147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 29617000 - 29617421
Alignment:
| Q |
10 |
aaataaatattgatgaccaaaccattaactttgcaggacccactctgtccatgattaatgcccttaatagcattactgtattcactttgtacataattga |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
29617000 |
aaataaatattgatgaccaaaccatttactttacaggacccactctatccatgattgatgtccttaatagcattactgtatccactttgtacat---tga |
29617096 |
T |
|
| Q |
110 |
atctatcccaaatcataacaccaccatatttagcagaacccttaatagcaggaagaacttgagaaatcaaaacatcagaaggaataaaaccaccacttgg |
209 |
Q |
| |
|
|| |||||||||||||| | || |||||||||| |||| |||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29617097 |
atttatcccaaatcatatctcccccatatttaggagaaatcttagtagctggaacaacttgagagatcaaaacatcagaaggaataaaaccaccacttgg |
29617196 |
T |
|
| Q |
210 |
agcagcagcatacttagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtgtttccactt |
309 |
Q |
| |
|
||||| |||| || ||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
29617197 |
agcagaagcagcatttgcaggaacacataaaaacatttgtttagcttgacttgaagtgcattgattccaagcactaacaagattgttagtgtttccattt |
29617296 |
T |
|
| Q |
310 |
gaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggtaaggacatt |
409 |
Q |
| |
|
|| ||| | || |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
29617297 |
gagtatcgacattgaggattattataaaactgaacccaaacataatcaaataaatcagtattaatagctgaattcaaataagcatttgggtaagggcatt |
29617396 |
T |
|
| Q |
410 |
gtggtgctgcagacaaataaacttt |
434 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
29617397 |
gtggtgctgcagacaaatagacttt |
29617421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 92 - 510
Target Start/End: Original strand, 23396144 - 23396543
Alignment:
| Q |
92 |
cactttgtacataattgaatctatcccaaatcataacaccaccatatttagcagaacccttaatagcaggaagaacttgagaaatcaaaacatcagaagg |
191 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| || |||||||||| | ||| ||||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
23396144 |
cactttgtacatcattgaatctatcccgaatcataactcccccatatttagaaaaactcttaatagctcgaagaacttgagagataaaaacatcagaagg |
23396243 |
T |
|
| Q |
192 |
aataaaaccaccacttggagcagcagcatacttagcaggtacacctaaaaaca-cttgtttagcttgacttgaagtccattgattccaagcatcaacaag |
290 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||| |||| |||||| | ||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
23396244 |
aataaaaccaccacttggagcagaagcagcatttacagaaacacataaaaaaaacttgtttagcttgacttgaagtccattgatttcaagcattaacaag |
23396343 |
T |
|
| Q |
291 |
attgttagtgtttccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatga |
390 |
Q |
| |
|
|||||||||||||||| |||| ||||| || ||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
23396344 |
attgttagtgtttccatttgagtattgacattgaggattattataaaaatgaacctaaacataatctaataaaccagtattaatagctgaatccaaataa |
23396443 |
T |
|
| Q |
391 |
gcatcagggtaaggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccat |
490 |
Q |
| |
|
|||| || ||||||||||||||| |||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23396444 |
gcataagagtaaggacattgtggcgctgcaaataaataaactt-----tgtg---------------gtgcttttgcaagttcatcccaatattgaccat |
23396523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 23396107 - 23396141
Alignment:
| Q |
11 |
aataaatattgatgaccaaaccattaactttgcag |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
23396107 |
aataaatattgatgaccaaaccattaactttgcag |
23396141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 454 - 594
Target Start/End: Original strand, 17570951 - 17571091
Alignment:
| Q |
454 |
tcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
553 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17570951 |
tcaagtgcttttgcaagttcatcccaatgttcaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
17571050 |
T |
|
| Q |
554 |
atgtgccacccaagaaattgttccataggtagtttgcaagc |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17571051 |
atgtgccacccaagaaattgttccataggtagtttgcaagc |
17571091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 576
Target Start/End: Original strand, 48222505 - 48222595
Alignment:
| Q |
486 |
accatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttc |
576 |
Q |
| |
|
|||| ||||| ||||||| |||||||| | |||||||| ||| ||||||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
48222505 |
accaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
48222595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 536
Target Start/End: Complemental strand, 47980246 - 47980207
Alignment:
| Q |
497 |
cttcaatatcaaaatcaattccatccaaaacagcatcacc |
536 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
47980246 |
cttcaatgtcaaaatcaatgccatccaaaacagcatcacc |
47980207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 149103 - 149062
Alignment:
| Q |
123 |
cataacaccaccatatttagcagaacccttaatagcaggaag |
164 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
149103 |
cataacaccgccatatttagcagaacctttaatagctggaag |
149062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 24454913 - 24454954
Alignment:
| Q |
123 |
cataacaccaccatatttagcagaacccttaatagcaggaag |
164 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
24454913 |
cataacaccaccatatttagaagaaccctttatagcgggaag |
24454954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 578
Target Start/End: Complemental strand, 43901341 - 43901261
Alignment:
| Q |
498 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttcca |
578 |
Q |
| |
|
|||||||||||||||||| ||||| || | |||||| || ||||| | ||||||||| | |||||||| || |||||||| |
|
|
| T |
43901341 |
ttcaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttcca |
43901261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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