View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_4 (Length: 406)
Name: NF11647_low_4
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_4 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 28469532 - 28469143
Alignment:
| Q |
1 |
acgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctacacactctaaccatggattt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
28469532 |
acgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttgtccctctacacactctaaccatggattt |
28469433 |
T |
|
| Q |
101 |
cttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccataaatctgacgtaaattgca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28469432 |
cttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccataaatctgacgtaaattgca |
28469333 |
T |
|
| Q |
201 |
actaccctattaattgccaattaacatgtcatagctttctaccatagatctacaccgtacatatcaatataaacacaaaccaagtagaaacaacccatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28469332 |
actaccctattaattgccaattaacatgccatagctttctaccatagatctccaccgtacatatcaatataaacacaaactaagtagaaacaacccatca |
28469233 |
T |
|
| Q |
301 |
ttcaaacctccataatttctctaaaccattcccacaacaattactccatgaatagtttcagaataagttaataagaga-ggccagtattg |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |
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|
| T |
28469232 |
ttcaaaccgccataatttctctaaaccattcccacaacaattactccatgaatagttttagaagaagttaataagagagggccagtattg |
28469143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 34734202 - 34734591
Alignment:
| Q |
1 |
acgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctacacactctaaccatggattt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34734202 |
acgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttgtccctctacacactctaaccatggattt |
34734301 |
T |
|
| Q |
101 |
cttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccataaatctgacgtaaattgca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34734302 |
cttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccataaatctgacgtaaattgca |
34734401 |
T |
|
| Q |
201 |
actaccctattaattgccaattaacatgtcatagctttctaccatagatctacaccgtacatatcaatataaacacaaaccaagtagaaacaacccatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
34734402 |
actaccctattaattgccaattaacatgccatagctttctaccatagatctccaccgtacatatcaatataaacacaaactaagtagaaacaacccatca |
34734501 |
T |
|
| Q |
301 |
ttcaaacctccataatttctctaaaccattcccacaacaattactccatgaatagtttcagaataagttaataagaga-ggccagtattg |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |
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|
| T |
34734502 |
ttcaaaccgccataatttctctaaaccattcccacaacaattactccatgaatagttttagaagaagttaataagagagggccagtattg |
34734591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 75508 - 75896
Alignment:
| Q |
1 |
acgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctacacactctaaccatggattt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
75508 |
acgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctacacactcta-ccatggattt |
75606 |
T |
|
| Q |
101 |
cttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccataaatctgacgtaaattgca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
75607 |
cttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccataaatctaacgtaaattgca |
75706 |
T |
|
| Q |
201 |
actaccctattaattgccaattaacatgtcatagctttctaccatagatctacaccgtacatatcaatataaacacaaaccaagtagaaacaacccatca |
300 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
75707 |
actaccctattaattcccaactaacatgccatagctttctaccatagatctccaccgtacatatcaatataaacacaaaccaagtagaaacaaccgatca |
75806 |
T |
|
| Q |
301 |
ttcaaacctccataatttctctaaaccattcccacaacaattactccatgaatagtttcagaataagttaataagaga-ggccagtattg |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |
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|
| T |
75807 |
ttcaaaccgccataatttctctaaaccattcccacaacaattactccatgaatagttttagaagaagttaataagagagggccagtattg |
75896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 24966187 - 24966575
Alignment:
| Q |
1 |
acgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctacacactctaaccatggattt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24966187 |
acgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctacacactcta-ccatggattt |
24966285 |
T |
|
| Q |
101 |
cttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccataaatctgacgtaaattgca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
24966286 |
cttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccataaatctaacgtaaattgca |
24966385 |
T |
|
| Q |
201 |
actaccctattaattgccaattaacatgtcatagctttctaccatagatctacaccgtacatatcaatataaacacaaaccaagtagaaacaacccatca |
300 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24966386 |
actaccctattaattcccaactaacatgccatagctttctaccatagatctccaccgtacatatcaatataaacacaaaccaagtagaaacaaccgatca |
24966485 |
T |
|
| Q |
301 |
ttcaaacctccataatttctctaaaccattcccacaacaattactccatgaatagtttcagaataagttaataagaga-ggccagtattg |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
24966486 |
ttcaaaccgccataatttctctaaaccattcccacaacaattactccatgaatagttttagaagaagttaataagagagggccagtattg |
24966575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 57 - 329
Target Start/End: Original strand, 29317723 - 29317995
Alignment:
| Q |
57 |
gtttgcataagctttctccctctacacactctaaccatggatttcttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaat |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
29317723 |
gtttgcataagctttctccctctacacactctaaccatggatttctttaggaactcttgaaagttatcacaaaacaatgatgcacatgtgacatcaaaat |
29317822 |
T |
|
| Q |
157 |
ctttcatctaaatatggaagaccataaatctgacgtaaattgcaactaccctattaattgccaattaacatgtcatagctttctaccatagatctacacc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
29317823 |
ctttcatctaaatatggaagaccataaatctgacgtaaattgcaactaccatattaattgccaattaacatgccatagctttctaccatagatctccacc |
29317922 |
T |
|
| Q |
257 |
gtacatatcaatataaacacaaaccaagtagaaacaacccatcattcaaacctccataatttctctaaaccat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29317923 |
gtacatatcaatataaacacaaaccaagtagaaacaacccatcattcaaacctccataatttctctaaaccat |
29317995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29315551 - 29315611
Alignment:
| Q |
1 |
acgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttg |
61 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29315551 |
acgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttg |
29315611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 29318429 - 29318480
Alignment:
| Q |
339 |
aattactccatgaatagtttcagaataagttaataagaga-ggccagtattg |
389 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
29318429 |
aattactccatgaatagttttagaagaagttaataagagagggccagtattg |
29318480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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