View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_6 (Length: 373)
Name: NF11647_low_6
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 6634265 - 6634056
Alignment:
| Q |
17 |
agacgtaaacaataatgttgacaatacaagttcagctgctgaggaacaaaaggaaagtgaaagtgtcaaagaggcaggtgttgaagaaaataaggacgat |
116 |
Q |
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| T |
6634265 |
agacataaacaataatgttgacaatacaagttcagctgctgaggaacaaaaggaaattgaaagtgtcaaagaggcaggtgttgaagaaaataaggacgat |
6634166 |
T |
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| Q |
117 |
gcagctaaggatgttaaagacagtgaagctatggagaaaataaatgatgaaggaaagaaagaggaggatgttgtggaggaaccttctaaagaaattgaga |
216 |
Q |
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| T |
6634165 |
gcagctaaggatgttaaagacggtgaagctatggagaaaataaatgatgaaggaaagaaagaggaggatgttgtggaggaaccttctgctgaagttgaga |
6634066 |
T |
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| Q |
217 |
aaaatgatga |
226 |
Q |
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|||| ||||| |
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| T |
6634065 |
aaaaagatga |
6634056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 218 - 359
Target Start/End: Complemental strand, 6634124 - 6633983
Alignment:
| Q |
218 |
aaatgatgaagaaaagaaggagaatgatgttgtggaggaaccttctgctgaagttgagaaaaaagatgaacatgcatcgataaagaatgacgagaaaatc |
317 |
Q |
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||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6634124 |
aaatgatgaaggaaagaaagaggaggatgttgtggaggaaccttctgctgaagttgagaaaaaagatgaccatgcatcgataaagaatgacgagaaaatc |
6634025 |
T |
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| Q |
318 |
aatgctgatgatgctgctggtactgaagaagagaaaaaattg |
359 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||| |
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| T |
6634024 |
aatgctgatggtgctgctgatactgaagaagagaaaaaattg |
6633983 |
T |
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