View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_7 (Length: 334)
Name: NF11647_low_7
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 42599800 - 42600119
Alignment:
| Q |
18 |
ttatgggctacccaaaatgttatgatgatttttccaactttaatcatttcattgatgataaaattttatttgatctttcgttgtgtggtagaatttcctt |
117 |
Q |
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| T |
42599800 |
ttatgggctacccaaaatgttatgatgatttttccaactttaatcgtttcattgatgataaaattttatttgatctttcgttgtgtggtagaatttcctt |
42599899 |
T |
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| Q |
118 |
ccaaatgtgtacatgcaccc-tctttcactaatat---attttatgacgactttgttaatatnnnnnnnnnngatgttatgatgatttttctcactttaa |
213 |
Q |
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| T |
42599900 |
ccaaatgtgtacatgcacccctctttcactaatattatattttatgatgactttgttaatataaaaaaaaaa-atgttatgatgatttttctcactttaa |
42599998 |
T |
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| Q |
214 |
tcatgtcaactaatattatagatggtctgtaggaatacccaaaacttgaattttcccacatagattcatagacaaagccattaacaactttcaatttagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42599999 |
tcatgtcaactaatattatagatggtctgtaggaatacccaaaacttgaattttcccacatagattcatagacaaagccattaacaactttcaatttagt |
42600098 |
T |
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| Q |
314 |
cttctaaatacataaaaccca |
334 |
Q |
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| T |
42600099 |
cttctaaatacataaaaccca |
42600119 |
T |
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