View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_8 (Length: 326)
Name: NF11647_low_8
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 592533 - 592235
Alignment:
| Q |
20 |
ggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataatt |
119 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
592533 |
ggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggtatcaaacttctgagacttgattgtttgttactttatgttgataatt |
592434 |
T |
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| Q |
120 |
gtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagt |
219 |
Q |
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|||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592433 |
gtaaattcctctcttgcagctttctttggctgtgttgttttctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagt |
592334 |
T |
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| Q |
220 |
tgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592333 |
tgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgc |
592235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 579895 - 580192
Alignment:
| Q |
20 |
ggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataatt |
119 |
Q |
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||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| |
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| T |
579895 |
ggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctgagacttgattgtttgtttctttatgttgataatt |
579994 |
T |
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| Q |
120 |
gtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagt |
219 |
Q |
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| T |
579995 |
gtaaattcctctcttgcaactttctttcactgtgttattt-ctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagt |
580093 |
T |
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| Q |
220 |
tgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580094 |
tgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgtctcttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgc |
580192 |
T |
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