View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_high_11 (Length: 389)
Name: NF11648_high_11
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 7755429 - 7755059
Alignment:
| Q |
1 |
gaagatggaaacaaccttaagaaaccatttcttaacactggtagctggtacagaatgggatcaaaacaaactaatatcttaaactcttcaactcaatatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7755429 |
gaagatggaaacaaccttaagaaaccatttcttaacactggtagctggtacagaatgggatcaaaacaaactaatatcttaaattcttcaactcaatatg |
7755330 |
T |
|
| Q |
101 |
tcatgcgagattcttctgtttctgtcctcctttgtgtcctcattgttgcattgggtcctcttcaattcggcttcacggtgctactattgcttcatatcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7755329 |
tcatgcgagattcttctgtttctgtcctcctttgtgtcctcattgttgcattgggtcctcttcaattcggcttcacggtgctactattgcttcatatcgt |
7755230 |
T |
|
| Q |
201 |
gaactaacnnnnnnnaagcctttactttctttggaatgatatataagtaaaaagatccaaaaagttaaatgtatttgatccaaattctatatcgaataaa |
300 |
Q |
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| T |
7755229 |
gatctaacttttcttaagcctttactttctttggaatgatatataagtaaaaagatccaaaaagttaaatgtatttgatccaaattctatttcgaataaa |
7755130 |
T |
|
| Q |
301 |
tttaactctttgaattttttgtctatatttcattcgagacgaagtatttcccaacaatttaacacgtttta |
371 |
Q |
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| T |
7755129 |
tttaactttttgaattttttgtctatatttcattcgagacgaagtatttgctaacaatttaacacgtttta |
7755059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 7920069 - 7920013
Alignment:
| Q |
229 |
ctttggaatgatatataagtaaaaagatccaaaaa-gttaaatgtatttgatccaaa |
284 |
Q |
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| T |
7920069 |
ctttggaatgaaatataaccaaaaatatccaaaaaagttaaatgtatttggtccaaa |
7920013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 45335889 - 45335850
Alignment:
| Q |
259 |
aaaaagttaaatgtatttgatccaaattctatatcgaata |
298 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||| |
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| T |
45335889 |
aaaaagttaaatgtatttgatccaaattttatatctaata |
45335850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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