View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11648_high_16 (Length: 335)

Name: NF11648_high_16
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11648_high_16
NF11648_high_16
[»] chr8 (11 HSPs)
chr8 (49-317)||(6362504-6362772)
chr8 (176-313)||(7470922-7471060)
chr8 (176-313)||(7458520-7458658)
chr8 (226-313)||(6351748-6351835)
chr8 (168-306)||(6369471-6369609)
chr8 (166-306)||(6390419-6390558)
chr8 (209-306)||(6409666-6409763)
chr8 (232-313)||(6423598-6423679)
chr8 (226-300)||(6320882-6320956)
chr8 (215-277)||(6288249-6288311)
chr8 (215-283)||(6331378-6331446)
[»] chr2 (1 HSPs)
chr2 (230-317)||(42689185-42689272)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 49 - 317
Target Start/End: Original strand, 6362504 - 6362772
Alignment:
Q  49 gatagttaggaaagttacttagagtttgtttgattggtagttactttgttgattctctactagctctatacatggctacaaagtcaaacatttaccattg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6362504 gatagttaggaaagttacttagagtttgtttgattggtagttactttgttgattctctactagctctatacatggctacaaagtcaaacatttaccattg 6362603  T
Q  149 aactgaaaccgtgtggtattatatttgagatcaatatctttttaaaaaatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatca 248  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6362604 aactgaaaccgtgtggtattatacttgagatcaatatctttttaaaaaacggactgagtcaagatgtaatgttttgtaaggttaccttttgattagatca 6362703  T
Q  249 ttaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatacttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6362704 ttaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatacttt 6362772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 7470922 - 7471060
Alignment:
Q  176 agatcaatatctttttaaaa-aatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaac 274  Q
    |||||||||||||||||||| ||||||| ||  |||||||||  |||||| |||||||||||||||||||||||||||| || |||||||||||||||      
T  7470922 agatcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaatt 7471021  T
Q  275 ccaatccttgtaaacgacagaagacatttccaaagcata 313  Q
    ||||||||||||||| |||| ||||||||| | ||||||    
T  7471022 ccaatccttgtaaacaacagcagacatttcgacagcata 7471060  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 7458520 - 7458658
Alignment:
Q  176 agatcaatatctttttaaaa-aatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaac 274  Q
    |||||||||||||||||||| ||||||| ||  |||||||||  |||||| |||||||||||||||||||||||||||| || |||||||| ||||||      
T  7458520 agatcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcggtgaaatt 7458619  T
Q  275 ccaatccttgtaaacgacagaagacatttccaaagcata 313  Q
    ||||||||||||||| |||| ||||||||| | ||||||    
T  7458620 ccaatccttgtaaacaacagcagacatttcaacagcata 7458658  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 6351748 - 6351835
Alignment:
Q  226 aaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcata 313  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||||  ||||||||||||||| |||| ||||||||||||||||||    
T  6351748 aaggttaccttttgattagatcgttaggtagtccttgctcaatgaaattccaatccttgtaaacaacagcagacatttccaaagcata 6351835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 6369471 - 6369609
Alignment:
Q  168 tatatttgagatcaatatctttttaaaaaatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcag 267  Q
    ||||||| |||| ||||||||| ||| |||||||||||  || |||| |||||||||| |  |||||| ||  |||||||| ||||||| ||||  ||||    
T  6369471 tatattttagattaatatctttctaataaatggactgaaccatgatgcaatgttttgctaaattacctattttttagatcagtaggtagtccttcttcag 6369570  T
Q  268 tgaaaacccaatccttgtaaacgacagaagacatttcca 306  Q
     ||||||||||||||||||||| ||||  ||||||||||    
T  6369571 cgaaaacccaatccttgtaaacaacagctgacatttcca 6369609  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 306
Target Start/End: Original strand, 6390419 - 6390558
Alignment:
Q  166 attatatttgagatcaatatctttttaaaaaatggactgagtcaa-gatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgct 264  Q
    ||||| |||||||||||| ||||| |||||| |||||| || | | ||||||||  |||| ||||| ||||||||||||||||||||||||| ||||| |    
T  6390419 attatttttgagatcaatgtctttctaaaaa-tggact-agacgacgatgtaataatttgtaaggtcaccttttgattagatcattaggtagtccttgat 6390516  T
Q  265 cagtgaaaacccaatccttgtaaacgacagaagacatttcca 306  Q
    |   |||||||||||||||||||||  ||||||||| |||||    
T  6390517 cttggaaaacccaatccttgtaaacttcagaagacaattcca 6390558  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 6409666 - 6409763
Alignment:
Q  209 aagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttcca 306  Q
    ||||| |||| ||||| ||| |||||||||||||||||||||||||||  |||| || | |||||||||||||||||||||  ||||||||| |||||    
T  6409666 aagatttaatattttgtaagcttaccttttgattagatcattaggtagtgcttgatccgggaaaacccaatccttgtaaacatcagaagacaattcca 6409763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 6423598 - 6423679
Alignment:
Q  232 accttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcata 313  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||| | ||  | |||| ||||||||||||||||||    
T  6423598 accttttgagtagatcattaggtagcccttgctcagtgaaaacccaatccctatatgcaacagcagacatttccaaagcata 6423679  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 6320882 - 6320956
Alignment:
Q  226 aaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagaca 300  Q
    ||||||||||||| | ||||||||||||||| ||||| || | ||||||||||||||| || |  ||||||||||    
T  6320882 aaggttaccttttaagtagatcattaggtagtccttgatctgggaaaacccaatccttatataatacagaagaca 6320956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 6288249 - 6288311
Alignment:
Q  215 taatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaaccca 277  Q
    |||||||||| ||||||||||||| | |||||||||||| |  ||||| || |||||||||||    
T  6288249 taatgttttgtaaggttaccttttaagtagatcattaggcaaaccttgatcggtgaaaaccca 6288311  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 6331378 - 6331446
Alignment:
Q  215 taatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatcctt 283  Q
    |||| ||||| ||||||||||||| | || ||||||||| || || |||||  ||||||||||||||||    
T  6331378 taatattttgtaaggttaccttttcagtaaatcattaggaagaccgtgctctatgaaaacccaatcctt 6331446  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 42689272 - 42689185
Alignment:
Q  230 ttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatacttt 317  Q
    |||||| ||||| ||||||   || ||| |||| |||| ||||||||||| |||||||||  | ||||||||||||| ||||||||||    
T  42689272 ttacctcttgataagatcagctggaagggcttgatcagggaaaacccaattcttgtaaaccgctgaagacatttccacagcatacttt 42689185  T

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