View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_high_17 (Length: 334)
Name: NF11648_high_17
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 45866400 - 45866084
Alignment:
| Q |
1 |
actcggaggagtaactttgaattcacttgtagctctattccacaatacaactctccgtaattcttgaatacaatgaatgcccccaactctcccagtgtct |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45866400 |
actcagaggagtaactttgaattcacttgtagctctattccacaatacaactctctgtaattcttgaatacaatgaatgcccccaactctcccagtgtct |
45866301 |
T |
|
| Q |
101 |
tcaatacaaagaattccattaacacttgcattgccataaatattaaagttaaagtcaaattgctcttgaaaaggatttggccaatccaatttgacaatat |
200 |
Q |
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| T |
45866300 |
tcaatacaaagaattccattaacacttgcattgccataaatattaaagttaaagtcaaattgctcttgaaaaggatttggccaatccaatttgacaatat |
45866201 |
T |
|
| Q |
201 |
tatcaaacctctcaccggcaagagaatacaacacaggcgcatatatgcgactgatatgccatggtgtagaatgatgtaatagaagagatgtatcatcgta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45866200 |
tatcaaacctctcaccggcaagagaatacaacacaggtgcatatatgcgactgatatgccatggtgtagaatgatgtaatagaagagatgtatcatcgta |
45866101 |
T |
|
| Q |
301 |
ataagaatgatcattag |
317 |
Q |
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||||||||||||||||| |
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| T |
45866100 |
ataagaatgatcattag |
45866084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 3368378 - 3368600
Alignment:
| Q |
5 |
ggaggagtaactttgaattcacttgtagctctattccacaatacaactctccgtaattcttgaatacaatgaatgcccccaactctcccagtgtcttcaa |
104 |
Q |
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| T |
3368378 |
ggaggagtgactttgaattcaccagtagttggattccacaatacgactctccctaattcttcaatgcaatgaatgccctcaattctcccagcgtcttcaa |
3368477 |
T |
|
| Q |
105 |
tacaaagaattccattaacacttgcattgccataaatattaaagttaaagtcaaattgctcttgaaaaggatttggccaatccaatttgacaatattatc |
204 |
Q |
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|||||||||| ||||||||||| ||| ||||||||| ||||| |||||||||||| | | |||||||||||||| |||||||| |||| || |
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| T |
3368478 |
tacaaagaataccattaacactagcacaaccataaata------ttaaaatcaaattgctctccatacggatttggccaatctaatttgaccctattctc |
3368571 |
T |
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| Q |
205 |
aaacctctcaccggcaagagaatacaaca |
233 |
Q |
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|||||||| ||| |||||||||||||| |
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| T |
3368572 |
gaacctctccccgaaaagagaatacaaca |
3368600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 34287827 - 34287764
Alignment:
| Q |
174 |
gatttggccaatccaatttgacaatattatcaaacctctcaccggcaagagaatacaacacagg |
237 |
Q |
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| T |
34287827 |
gatttggccaatctaatttgaccttattatcaaacctctcactagaaagagaatacaacacagg |
34287764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 42630310 - 42630377
Alignment:
| Q |
166 |
ttgaaaaggatttggccaatccaatttgacaatattatcaaacctctcaccggcaagagaatacaaca |
233 |
Q |
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|||||| |||||||||||||| |||||||| ||||| | |||||||||||| |||||||||||||| |
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| T |
42630310 |
ttgaaatggatttggccaatctaatttgaccatattttgaaacctctcaccaaaaagagaatacaaca |
42630377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 42630191 - 42630278
Alignment:
| Q |
38 |
ttccacaatacaactctccgtaattcttgaatacaatgaatgcccccaactctcccagtgtcttcaatacaaagaattccattaacac |
125 |
Q |
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| T |
42630191 |
ttccacaatgcaattctttgtagttcttcaatacaaagaatgccaccatctctaccatcatcttcaatacaaagaatgccattaacac |
42630278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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