View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_high_18 (Length: 314)
Name: NF11648_high_18
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 54951156 - 54951344
Alignment:
| Q |
39 |
gttataagccaacaagaaaagtttgtttaccaaacacttttcatttgatcaaataagcttatataagttagttcaataaattattaatctatctaaccac |
138 |
Q |
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| T |
54951156 |
gttataagctaataagaaaagtttatttagcaaacacttttcatttgatcaaacaagcttatataagttagttcaataaattattaatctatctaaccac |
54951255 |
T |
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| Q |
139 |
aagaatcatcgatt-aactgttgggattttgtattatgatatttt-tctcacttttatatgcccttcgtccgtttcttattcatctcat |
225 |
Q |
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| T |
54951256 |
aagaatcatcgattcaactgttgggattttgtattatgatattttatctcacttttatatgcccttcgtccgtttcttattcatctcat |
54951344 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 46334737 - 46334697
Alignment:
| Q |
61 |
ttgtttaccaaacacttttcatttgatcaaataagcttata |
101 |
Q |
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| T |
46334737 |
ttgtttaccaaacacgtctcatttgatcaaacaagcttata |
46334697 |
T |
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