View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_high_20 (Length: 293)
Name: NF11648_high_20
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 27473049 - 27473330
Alignment:
| Q |
1 |
aaagatataaatatattaagaaggactcaactagcacttgaggttgccaatgactaatgttgtttctgaaggaaatagcaagtatatttatagttattga |
100 |
Q |
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| T |
27473049 |
aaagatataaatatattaagaaggatttaactagcacttgaggttgccaatgactaatgttgtttctgaaggaaatagcaagtatatttatagttattga |
27473148 |
T |
|
| Q |
101 |
ggttctctgaaaatccaattccaagctaaattattatttgaaattgttaacgattaaatagcataagataatatagcatttggtgttgtcttaagattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27473149 |
ggttctctgaaaatccaattccaagctaaattattatttgaaattgttaacgattaaatagcataagataatatagcatttggtgttgtcttaagattgt |
27473248 |
T |
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| Q |
201 |
accccaccttctcaaaaaatgggaaatacatagcatctacttgcaaccaattgagactttctcaagtgcagagcagcttcat |
282 |
Q |
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| T |
27473249 |
accccaccttctcaaaaaatgggaaatacaaagcatctacttgcaaccaattgagactttctcaagtgcagagcagcttcat |
27473330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 27465975 - 27466272
Alignment:
| Q |
1 |
aaagatataaatatattaagaaggactcaactagcacttgaggttgccaatgactaatgttgtttctgaaggaaatagcaagtatatttatagttattga |
100 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
27465975 |
aaagatataaatatattaagaaggatgtaactaacacttgacgttgccaatgactaatgttgtttttgaaggaaatagcaagtatatttataattattga |
27466074 |
T |
|
| Q |
101 |
ggttctc-------tgaaaatccaattccaagctaaattattatttgaaattgttaacgattaaatagcataagataatatagcatttggtgttgtctta |
193 |
Q |
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| T |
27466075 |
ggttctctgaaaagtgaaaatccgattccaatctaaaatattatttgaaagagttgaaagttaaagagcataagataatatatcatgtggcgttgtctta |
27466174 |
T |
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| Q |
194 |
agatt---------gtaccccaccttctcaaaaaatgggaaatacatagcatctacttgcaaccaattgagactttctcaagtgcagagcagcttcat |
282 |
Q |
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||||| |||||||||||||| | ||||||| |||| | |||||| |||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
27466175 |
agattgcatttatcgtaccccaccttctaagaaaatggccaatataaagcatccacttgcaaccaaatgagactttctcaagtgcagagcagcctcat |
27466272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 82 - 277
Target Start/End: Complemental strand, 27517543 - 27517348
Alignment:
| Q |
82 |
gtatatttatagttattgaggttctctgaaaatccaattccaagctaaattattatttgaaattgttaacgattaaatagcataagataatatagcattt |
181 |
Q |
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||||||||||||| |||||| || ||||||||| | |||| ||||||||||||||||||||| ||||| | ||| | |||||||||||||||||||| | |
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| T |
27517543 |
gtatatttatagtcattgagtttatctgaaaattcgattcaaagctaaattattatttgaaagagttaaaggttagagagcataagataatatagcatgt |
27517444 |
T |
|
| Q |
182 |
ggtgttgtcttaagattgtaccccaccttctcaaaaaatgggaaatacatagcatctacttgcaaccaattgagactttctcaagtgcagagcagc |
277 |
Q |
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| T |
27517443 |
ggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgagactttctcaagtgcagagcagc |
27517348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 27501132 - 27501014
Alignment:
| Q |
81 |
agtatatttatagttattgaggttctctgaaaatccaattccaagctaaattattatttgaaattgttaacgattaaatagcataagataatatagcatt |
180 |
Q |
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|||||||||||||||||||||||||| || ||| |||||| |||||||||||||| ||||||| ||||| || ||||||| ||||||||| |
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| T |
27501132 |
agtatatttatagttattgaggttctttggaaacccaattacaagctaaattattgtttgaaagagttaa---------aggataagatgatatagcatg |
27501042 |
T |
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| Q |
181 |
tggtgttgtcttaagattgtaccccacc |
208 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
27501041 |
tggtgttgttttaagattgtaccccacc |
27501014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 216
Target Start/End: Complemental strand, 27526998 - 27526817
Alignment:
| Q |
36 |
acttgaggttgccaatgactaatgttgtttctgaaggaaatagcaagtatatttatagttattgaggttctctgaaaatccaattccaagctaaattatt |
135 |
Q |
| |
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|||||| | ||||||||||| |||| ||| || | ||||| | ||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||| |
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| T |
27526998 |
acttgacgatgccaatgacttgtgttatttttggaagaaattgtaagtatatttatagttactgaggttctctggaaacctaattccaagctaaattatt |
27526899 |
T |
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| Q |
136 |
atttgaaattgttaacgattaaatagcataagataatatagcatttggtgttgtcttaagattgta-ccccaccttctcaaa |
216 |
Q |
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||| ||| ||||| | | | | | || |||| | ||| ||| ||||||||||||| ||| ||| ||||||||||||||| |
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| T |
27526898 |
gtttaaaagagttaaaggtaagagaaaattagatgagataccatgtggtgttgtcttatgatggtacccccaccttctcaaa |
27526817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 27479237 - 27479292
Alignment:
| Q |
80 |
aagtatatttatagttattgaggttctctgaaaatccaattccaagctaaattatt |
135 |
Q |
| |
|
||||||||||||||||| |||| |||| || ||| | ||||||||||||||||||| |
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| T |
27479237 |
aagtatatttatagttactgagattctttgcaaacctaattccaagctaaattatt |
27479292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 27486297 - 27486352
Alignment:
| Q |
80 |
aagtatatttatagttattgaggttctctgaaaatccaattccaagctaaattatt |
135 |
Q |
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||||||||||||||||| |||| |||| || ||| | ||||||||||||||||||| |
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| T |
27486297 |
aagtatatttatagttactgagattctttgcaaacctaattccaagctaaattatt |
27486352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 27497611 - 27497683
Alignment:
| Q |
36 |
acttgaggttgccaatgactaatgttgtttctgaaggaaatagcaagtatatttatagttattgaggttctct |
108 |
Q |
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|||||||| ||||||||| | |||||||| |||||| || || ||| |||||||| ||||||||||||||| |
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| T |
27497611 |
acttgaggatgccaatgaattgtgttgtttgtgaaggcaagaggaagcgtatttataattattgaggttctct |
27497683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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