View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_high_30 (Length: 241)
Name: NF11648_high_30
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 34088072 - 34087859
Alignment:
| Q |
19 |
accctcgtgtccttttcttcagcgtacgacatcaacaagatcaagcaataaaaatagtggtgccaagtcccatcaatctcaattccatttccatttcaat |
118 |
Q |
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| T |
34088072 |
accctcatgtccttttcttcagcgtacgacatcaacaagatcaagcaataaaaatagtggtgccaagtcccatcaatctcaattccaattccatttcaat |
34087973 |
T |
|
| Q |
119 |
tgattggatggaattcatcccttcttcttatcgtacgctgtacattcattatttttgtccgtaggattattattagattaactaattaatattaccatgt |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34087972 |
tgattggatggaattcatccct---tcttatcgtacgctgtacattcattatttttgtccgtaggattattattagat----taattaatattaccatgt |
34087880 |
T |
|
| Q |
219 |
ttacatcattgcgttttcttc |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34087879 |
ttacatcattgcgttttcttc |
34087859 |
T |
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