View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11648_high_33 (Length: 238)
Name: NF11648_high_33
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28638083 - 28637866
Alignment:
| Q |
1 |
tataattgtgcacttttggaggcaaaattcactttatgttaatctttttctattacttcccacttatagtatagctttatggcgaagataatttaattgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28638083 |
tataattgtgcacttttggaggcaaaattcactttatgttaatctttttctattacttcccacttatagtatagctttatggtgaagataatttaattgc |
28637984 |
T |
|
| Q |
101 |
aaattatctcttcatatctatgagtgctacctaattttgtcctttacaacagacagaaaattgtgtatcagattttgtgctgctttacacatttcaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28637983 |
aaattatctcttcatatctatgagtgctacctaattttgtcctttacaacagacagaaaattgtgtatcagatttattgctgctttacacat------tt |
28637890 |
T |
|
| Q |
201 |
catcacatggtagtagttaatgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28637889 |
catcacatggtagtagttaatgtt |
28637866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University