View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_high_34 (Length: 230)
Name: NF11648_high_34
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_34 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 41381757 - 41381883
Alignment:
| Q |
1 |
aacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacacta |
100 |
Q |
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| T |
41381757 |
aacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattgtacatttgcttgtactcccttgtgtacacta |
41381856 |
T |
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| Q |
101 |
ccagcccaagcaattgcagagtaactg |
127 |
Q |
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| T |
41381857 |
ccaacccaagcaattgcagagtaactg |
41381883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 7971320 - 7971446
Alignment:
| Q |
1 |
aacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacacta |
100 |
Q |
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| T |
7971320 |
aacagagccaagtgcattaaagaaattaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatacta |
7971419 |
T |
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| Q |
101 |
ccagcccaagcaattgcagagtaactg |
127 |
Q |
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| T |
7971420 |
ccagcccaagcaattgtagagtaactg |
7971446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 8042393 - 8042267
Alignment:
| Q |
1 |
aacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacacta |
100 |
Q |
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| T |
8042393 |
aacagagccaagtgcattaaagaaataaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatacta |
8042294 |
T |
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| Q |
101 |
ccagcccaagcaattgcagagtaactg |
127 |
Q |
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| T |
8042293 |
ccagcccaagcaattgtagagtaactg |
8042267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 8032489 - 8032363
Alignment:
| Q |
1 |
aacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacacta |
100 |
Q |
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|||||| || ||||||||||||||||||||||| ||| ||||| || | || || |||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
8032489 |
aacagagccgagtgcattaaagaaattaaagactgattctgcagtatttgtagccttgctactatattgtacattttcttgtactcccttgtgtacacta |
8032390 |
T |
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| Q |
101 |
ccagcccaagcaattgcagagtaactg |
127 |
Q |
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| T |
8032389 |
gtagtccaagcaattgtagaataactg |
8032363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 2625 - 2744
Alignment:
| Q |
8 |
ccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacactaccagccc |
107 |
Q |
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|||||||||||||||||||||||||| ||| |||| ||||| || || ||| |||||| ||||||| || ||||||||||||| ||| ||| || |
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| T |
2625 |
ccaagtgcattaaagaaattaaagactgattctgcggccgtcgtagcgtttctactatattgtacattttctattactcccttgtgtgcaccggcagtcc |
2724 |
T |
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| Q |
108 |
aagcaattgcagagtaactg |
127 |
Q |
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||||||| | |||||||||| |
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| T |
2725 |
aagcaatagtagagtaactg |
2744 |
T |
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