View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_high_35 (Length: 225)
Name: NF11648_high_35
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_35 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11134813 - 11135037
Alignment:
| Q |
1 |
ctcttcaaatttcttcctttgctttgctttttcgtgtgatcgttcgattttcttttcgttgctatggatattgatctttctcctcaattggcaaagaaag |
100 |
Q |
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|||| ||| ||| ||||||||||||| |||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11134813 |
ctctccaagttttttcctttgctttgttttttcgtgtgatcgttcaattttgttttggttgctatggatattaatctttctcctcaattggcaaagaaag |
11134912 |
T |
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| Q |
101 |
tgtacggtggtgatggtggatcgtactatgcttggtctccttctgagcttcgtatgttacgtgaaggtaacattggtgctgccaagttagctcttgagaa |
200 |
Q |
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| T |
11134913 |
tgtacggtggtgatggtggatcgtactatgcttggtctccttctgagcttcctatgttacgtgaaggtaacattggtgctgccaagttagctcttgagaa |
11135012 |
T |
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| Q |
201 |
gaatggttttgctgttccaaggtat |
225 |
Q |
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| T |
11135013 |
gaatggttttgctgttccaaggtat |
11135037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 27544193 - 27543982
Alignment:
| Q |
14 |
ttcctttgctttgctttttcgtgtgatcgttcgattttcttttcgttgctatggatattgatctttctcctcaattggcaaagaaagtgtacggtggtga |
113 |
Q |
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| T |
27544193 |
ttcctttgctttgctttttcgtgtgatcgttcaatttttgtgttgttgctatggatatcgatctttctcctcaattggctaagaaagtgtacggtggtga |
27544094 |
T |
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| Q |
114 |
tggtggatcgtactatgcttggtctccttctgagcttcgtatgttacgtgaaggtaacattggtgctgccaagttagctcttgagaagaatggttttgct |
213 |
Q |
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| T |
27544093 |
tggtggatcgtactatgcatggtctccttctgaacttcctatgttgcgtgaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgct |
27543994 |
T |
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| Q |
214 |
gttccaaggtat |
225 |
Q |
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| T |
27543993 |
gttccaaggtat |
27543982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 23260278 - 23260059
Alignment:
| Q |
5 |
tcaaatttcttcctttgctttgctttttcgtgtgatcgttcgattttcttttcgttgctatggatattgatctttctcctcaattggcaaagaaagtgta |
104 |
Q |
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| T |
23260278 |
tcaaattttttcctctgctttgcttttttgtgtgatcgttcgatttttgtgttgttatcatggatatcaatctttctcctcaaatggccaaggaagttta |
23260179 |
T |
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| Q |
105 |
cggtggtgatggtggatcgtactatgcttggtctccttctgagcttcgtatgttacgtgaaggtaacattggtgctgccaagttagctcttgagaagaat |
204 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
23260178 |
cggcggcgatggtggatcgtactatgcttggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgccaagttagctcttcacaagaat |
23260079 |
T |
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| Q |
205 |
ggttttgctgttccaaggta |
224 |
Q |
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| T |
23260078 |
ggttttgctgttccgaggta |
23260059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 23278154 - 23277963
Alignment:
| Q |
28 |
tttttcgtgtgatcgttcgattttcttt-tcgttgctatggatattgatctttctcctcaattggcaaagaaagtgtacggtggtgatggtggatcgtac |
126 |
Q |
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| T |
23278154 |
tttttcgtgtgatcgttcgattttgtgcgttgttgctatggatatcgatctttctcctcaggttgccaagaaagtttacggtggcgatggtggatcgtac |
23278055 |
T |
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| Q |
127 |
tatgcttggtctccttctgagcttcgtatgttacgtgaaggtaacattggtgctgccaagttagctcttgagaagaatggttttgctgttcc |
218 |
Q |
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| T |
23278054 |
tacgcttggtcaccttctgagcttcctatgttgcgtgaaggtaacattggtgctgccaagttagcgcttcagaagaacggttttgctgttcc |
23277963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 12280059 - 12280174
Alignment:
| Q |
103 |
tacggtggtgatggtggatcgtactatgcttggtctccttctgagcttcgtatgttacgtgaaggtaacattggtgctgccaagttagctcttgagaaga |
202 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||| ||| |||||| |
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| T |
12280059 |
tacggtggtgatggtggatcgtactctgcttggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgctaagttagcgcttcagaaga |
12280158 |
T |
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| Q |
203 |
atggttttgctgttcc |
218 |
Q |
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| T |
12280159 |
atggttttgttgttcc |
12280174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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