View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11648_high_6 (Length: 493)
Name: NF11648_high_6
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 51960418 - 51959943
Alignment:
| Q |
1 |
aattgagtctaatgtagtaagtaaatcgtcaagacccatgagcccaagaaaaatatattttggctcaagtgacttagagactatgaatcctattagacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51960418 |
aattgagtctaatgtagtaagtaaatcgtcaagacccatgagcccaagaaaaatatatttcggctcaagtgacttagagactatgaatcctattagacca |
51960319 |
T |
|
| Q |
101 |
tgattcacctccttctagaaggatttagatagttccagtatgacaaatcattggttagtttcttagaatatatcaatgttataagtaaagtattagtg-- |
198 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51960318 |
tgcatcacctccttctagaaggatctagatagtttcagtatgacaaatcattgattagtttcttagaatatatcaatgttataagtaaagtattagtgaa |
51960219 |
T |
|
| Q |
199 |
--caatcgtcaccaagaatgaatatgaaaacgaaaatagttttaagataatgtagtcctagttctagtctccttcattgtatttccttcttgtttgtacc |
296 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51960218 |
tgcaaccgtcaccaagaatgaatatgaaaacgaaaatagttttaagataatgtagtcctagtcatagtctccttcattgtatttccttcttatttgtacc |
51960119 |
T |
|
| Q |
297 |
acgaaaaagtggaatcttacataaacacttaaaaatatagtaatacttatactttcttctctctagtgagttgatcatttggcgtcagtcactctcgatt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51960118 |
acgaaaaagtggaatcttacataaacacttaaaaatacagtaatacttatactttcttctctctagtgagtttatcatttggcgtcagtcactctcgatt |
51960019 |
T |
|
| Q |
397 |
acatagttgtaaggaaagtgtggcatctctagctatggtgctgatcgatcacaaccgcattttacaatctagggggaagt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51960018 |
acatagttgtaaggaaagtgtggcatctctagctatggcgct----gatcacaaccgcattttacaatctagggggaagt |
51959943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University