View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_low_13 (Length: 383)
Name: NF11648_low_13
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 12422123 - 12422373
Alignment:
| Q |
21 |
gtattcctagggttaaacattttgaataagaaaatattaaatagttcaaaacaatcataaatgcaaagaagggagtggtagatcctcatattaaaatttt |
120 |
Q |
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| T |
12422123 |
gtattgctagggttaaacattttgcaaaagaaaatattaaatagttcaaaacaatcataaatgcaaagaagggagtggtagatcctcatattaaattttt |
12422222 |
T |
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| Q |
121 |
cagattttattaagcttttagtttacttgtaagaaaagtaacaataaccacttac-----agttcagaagttatttctttatgtctcttttacatttgcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |
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| T |
12422223 |
tagattttattaagcttttagtttacttgtaagaaaagtaacaataaccactttcagctaagttcagaagttatttcttcatgtctcttttacatttgcg |
12422322 |
T |
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| Q |
216 |
atttctgtgcaatcaacaacacagtgctagcatgttgagaaagaagaaata |
266 |
Q |
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| T |
12422323 |
atttatgtgcaatcaacaacacactgctagcatgttgagaaagaagaaata |
12422373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 12422842 - 12422892
Alignment:
| Q |
333 |
aaaaagcatctaaaagacattcatttgcaagacgttttctcttttatcatc |
383 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12422842 |
aaaaagcatctaaaagacattcattagcaagacgttttctcttttatcatc |
12422892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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