View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_low_15 (Length: 362)
Name: NF11648_low_15
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 25439965 - 25439855
Alignment:
| Q |
237 |
ccttcccaccgcttcctttcccctcatctcccacccatagctacaaccctcaaccacggctcctctctccgaccattgaccattgataactgtcgtcatt |
336 |
Q |
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| T |
25439965 |
ccttcccaccgcttcctttcccctcatctcccacccatagctacaacccccaaccacggctcctctctccgaccattgaccattgataactgtcgtcatt |
25439866 |
T |
|
| Q |
337 |
tcgccgttcct |
347 |
Q |
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| T |
25439865 |
tcgccgttcct |
25439855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 25440086 - 25440025
Alignment:
| Q |
126 |
agagttttgataattgaacacagaatatgaaacacaatacagataccgtataaaatactgca |
187 |
Q |
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| T |
25440086 |
agagttttgataactgaacacaaaatatgaaacacaatacagacaccatataaaatactgca |
25440025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 36829633 - 36829683
Alignment:
| Q |
118 |
atagaataagagttttgataattgaacacagaatatgaaacacaatacaga |
168 |
Q |
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| T |
36829633 |
atagactaagagttatgataactgaacacataatatcaaacacaatacaga |
36829683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 24946600 - 24946709
Alignment:
| Q |
17 |
atctttacaaaatccttaaggggaccgcgaattcaaaatatttgttccaagcttggagcatttaatctatatgctccgtcttgagggagagtgttggaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24946600 |
atctttacaaaatccttaaggggaccgcgaattcaaaatatttgttccaagcttggagcatttaatctatatgctccgtcttgagggggagtgttggaat |
24946699 |
T |
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| Q |
117 |
tatagaataa |
126 |
Q |
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| |||||||| |
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| T |
24946700 |
tgtagaataa |
24946709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 20707310 - 20707419
Alignment:
| Q |
17 |
atctttacaaaatccttaaggggaccgcgaattcaaaatatttgttccaagcttggagcatttaatctatatgctccgtcttgagggagagtgttggaat |
116 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |
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| T |
20707310 |
atcttcacaaaatccttaaggggaccgcgaattcaaagtatttgttccaagcttggagcatttgatctatatgctccatcttgagggggagtgttggaat |
20707409 |
T |
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| Q |
117 |
tatagaataa |
126 |
Q |
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|||||||||| |
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|
| T |
20707410 |
tatagaataa |
20707419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 48186674 - 48186716
Alignment:
| Q |
133 |
tgataattgaacacagaatatgaaacacaatacagataccgta |
175 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
48186674 |
tgataattgaacacaaaatatgaaacacaatacagacaccgta |
48186716 |
T |
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