View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_low_17 (Length: 355)
Name: NF11648_low_17
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 59 - 348
Target Start/End: Complemental strand, 5257781 - 5257495
Alignment:
| Q |
59 |
aaaaataggaatgtgatattaatattgcgatttctgtaatttctatgtgtctaactcagatcacaagtttatagggacaagattaatgcagggactaaac |
158 |
Q |
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| T |
5257781 |
aaaaataggaatgtgatattaatattgcgatttctgtaatttctatgtgtctaactcagatcacaagttaatagggacaagattaatgcagggactaaac |
5257682 |
T |
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| Q |
159 |
ttgaaaatttgtgaaattttttgggactaaacatttttaaccttgaaatcaaatgtaatttatatgtatctctgcaaatttatagggactaaaagcgtgg |
258 |
Q |
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| T |
5257681 |
tt-------tgtgaaattttttgggactaaacatttttaaccttgaaatcaattgtaatttataagtatctctgctaatttatagggactaaaagcgtgg |
5257589 |
T |
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| Q |
259 |
tccatg----ctagtgacagattgatctttggacttatctttcgctctaagttttgatctccatattgtaggttctgggagctcaacctttgct |
348 |
Q |
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| T |
5257588 |
tccatgctagctagtgacagattgatctgtggacttatctttcgctctaagttttgatctccatattgtaggttctgggagctcaacctttgct |
5257495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 5277634 - 5277451
Alignment:
| Q |
18 |
agtgagatcggtaggtgcaatgagaagacaaaattgtgacaaaaaataggaatgtgatattaatattgcgatttctgtaatttctatgtgtctaactcag |
117 |
Q |
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| T |
5277634 |
agtgagatcggtaggtgcaatgagaagacaaaattgtgacaaaaaataggaatgtgatattaatattgcaatttctgtaatttctgtgtatctaactcag |
5277535 |
T |
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| Q |
118 |
atcacaagtttatagggacaagattaatgcagggactaaacttgaaaatttgtgaaattttttgggactaaacatttttaacctt |
202 |
Q |
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| T |
5277534 |
atcacaagtttatagggacaagattaatgtagggactaaacttgaaaa-ctctgaactttttagggactaaacatatttaacctt |
5277451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 5277360 - 5277321
Alignment:
| Q |
248 |
taaaagcgtggtccatgctagtgacagattgatctttgga |
287 |
Q |
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| T |
5277360 |
taaaagcgtggtccatgctaatgacagattgatctgtgga |
5277321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 5257808 - 5257778
Alignment:
| Q |
20 |
tgagatcggtaggtgcaatgagaagacaaaa |
50 |
Q |
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| T |
5257808 |
tgagatcggtaggtgcaatgagaagacaaaa |
5257778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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