View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_low_28 (Length: 250)
Name: NF11648_low_28
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 1541813 - 1541582
Alignment:
| Q |
19 |
tttcttctcaaatcctcacaacccaatttcacctcctcgattcactaaaaaagacttgcaaannnnnnnatggcaaccttaaaattaacctcccacctac |
118 |
Q |
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| T |
1541813 |
tttcttctcaaatcctcacaacccaatttcacctcctcgattcactaaaaaagacttgcagatttttttatggcaaccttaaaattaacctcccacctac |
1541714 |
T |
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| Q |
119 |
caaagacaacctgtatagaggtcacatcttagcaaatacatatattttatgttcgtttagttgtgatattgtggaaaaccagaaacacttattctttcaa |
218 |
Q |
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| T |
1541713 |
caaagacaacctgtatagaggtcacatcttggcaaatacatatattttatgttcgtttagttgtgatattgtggaaaaccataaacacttattctttcaa |
1541614 |
T |
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| Q |
219 |
tgtaaccactacaatcaactttgatatttgac |
250 |
Q |
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| T |
1541613 |
tgtaactactacaatcaactttgatatttgac |
1541582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 50618269 - 50618148
Alignment:
| Q |
123 |
gacaacctgtatagaggtcacatcttagcaaatacatatattttatgttcgtttagttgtgatattgtggaaaaccagaaacacttattctttcaatgta |
222 |
Q |
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|||||||||| ||| |||||||||| |||||||| || ||||||||||| | |||||||| |||||||| | ||| |||||||| |||||| ||| |
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| T |
50618269 |
gacaacctgtttaggcgtcacatcttgccaaatacagatgttttatgttcgacttgttgtgattttgtggaagattggaatcacttattttttcaaagta |
50618170 |
T |
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| Q |
223 |
accactacaatcaactttgata |
244 |
Q |
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| T |
50618169 |
atttctacggtcaactttgata |
50618148 |
T |
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