View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_low_31 (Length: 241)
Name: NF11648_low_31
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 33383236 - 33383012
Alignment:
| Q |
19 |
tctcaaacttcttaggcagactcacacacactatagtaatcatacaaatcgtcagaaaatccattaagaataaaattctattagaggtaattgtattcat |
118 |
Q |
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| T |
33383236 |
tctcaaacttcttaggcagactcacacacactatagtaatcatacaaatcgtcagaaaatccattaagaataaaattctattagaggtaattgtattcat |
33383137 |
T |
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| Q |
119 |
tccaaatgagtatttcttaagc--nnnnnnnatccttttctacttgttcatctatttcaagcactaccggatctcatccttcaaaacattggcaaccttt |
216 |
Q |
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| T |
33383136 |
tccaaatgagtatttcttaagctttttttttatctttttctacttgttcatctatttcaaacactaccggatctcatccttcaaaacattggcaaccttt |
33383037 |
T |
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| Q |
217 |
ttgttgttaagaaggacaccatctt |
241 |
Q |
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|||||| ||||||||||||||||| |
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| T |
33383036 |
atgttgtcaagaaggacaccatctt |
33383012 |
T |
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