View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_low_35 (Length: 240)
Name: NF11648_low_35
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 39677299 - 39677441
Alignment:
| Q |
79 |
atgatttatttacatgatattttaataatgcaggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagtta |
178 |
Q |
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| T |
39677299 |
atgatttatttacataatattttaataatgcaggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagtta |
39677398 |
T |
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| Q |
179 |
agggagctagtaaagagagtccaggagcaaactctaggcaatt |
221 |
Q |
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| T |
39677399 |
agggagctagtaaagagagtccaggagcaaactctaggcaatt |
39677441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 10048272 - 10048395
Alignment:
| Q |
98 |
ttttaataatgcaggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagttaagggagctagtaaagagag |
197 |
Q |
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||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||| | |
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| T |
10048272 |
ttttaataatgcaggtgggtacagttggaggaggcacacagcttgcatcacaatcagcttgtttgaatttacttggtgttaagggtgctagtaaagaaac |
10048371 |
T |
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| Q |
198 |
tccaggagcaaactctaggcaatt |
221 |
Q |
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|||||||||||| ||||||||||| |
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| T |
10048372 |
tccaggagcaaattctaggcaatt |
10048395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 10886733 - 10886624
Alignment:
| Q |
110 |
aggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagttaagggagctagtaaagagagtccaggagcaaa |
209 |
Q |
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| T |
10886733 |
aggtgggtacagtaggagggggcacacaacttgcgtcgcaatcagcttgtctaaatttacttggtgttaaaggagctagtaaagagactccaggagcaaa |
10886634 |
T |
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| Q |
210 |
ctctaggcaa |
219 |
Q |
| |
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|| |||||| |
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| T |
10886633 |
ttccaggcaa |
10886624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 10867636 - 10867745
Alignment:
| Q |
110 |
aggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagttaagggagctagtaaagagagtccaggagcaaa |
209 |
Q |
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||||||| ||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
10867636 |
aggtgggcacagtaggagggggcacacaacttgcgtcgcaatcagcttgtctaaatttacttggtgttaaaggagctagtaaagagactccaggagcaaa |
10867735 |
T |
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| Q |
210 |
ctctaggcaa |
219 |
Q |
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|| |||||| |
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| T |
10867736 |
ttccaggcaa |
10867745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 10872676 - 10872567
Alignment:
| Q |
110 |
aggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagttaagggagctagtaaagagagtccaggagcaaa |
209 |
Q |
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||||||| ||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
10872676 |
aggtgggcacagtaggagggggcacacaacttgcgtcgcaatcagcttgtctaaatttacttggtgttaaaggagctagtaaagagactccaggagcaaa |
10872577 |
T |
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| Q |
210 |
ctctaggcaa |
219 |
Q |
| |
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|| |||||| |
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| T |
10872576 |
ttccaggcaa |
10872567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 10877747 - 10877638
Alignment:
| Q |
110 |
aggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagttaagggagctagtaaagagagtccaggagcaaa |
209 |
Q |
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||||||| ||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
10877747 |
aggtgggcacagtaggagggggcacacaacttgcgtcgcaatcagcttgtctaaatttacttggtgttaaaggagctagtaaagagactccaggagcaaa |
10877648 |
T |
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| Q |
210 |
ctctaggcaa |
219 |
Q |
| |
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|| |||||| |
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| T |
10877647 |
ttccaggcaa |
10877638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 10882818 - 10882709
Alignment:
| Q |
110 |
aggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagttaagggagctagtaaagagagtccaggagcaaa |
209 |
Q |
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||||||| ||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
10882818 |
aggtgggcacagtaggagggggcacacaacttgcgtcgcaatcagcttgtctaaatttacttggtgttaaaggagctagtaaagagactccaggagcaaa |
10882719 |
T |
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| Q |
210 |
ctctaggcaa |
219 |
Q |
| |
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|| |||||| |
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| T |
10882718 |
ttccaggcaa |
10882709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39677161 - 39677216
Alignment:
| Q |
1 |
tcactatgccttccattgaggtatatataattacttgttttaatctttattattggtttg |
60 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39677161 |
tcactatgccttccattgaggtata----attacttgttttaatctttattattggtttg |
39677216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 30707717 - 30707634
Alignment:
| Q |
99 |
tttaataatgcaggtgggtacagttggagggggtacacaacttgcatctcaatcagcttgtcttaatttacttggagttaaggg |
182 |
Q |
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| T |
30707717 |
tttaataatttaggttggtactgtgggagggggaacacaacttgcatctcagtcagcttgtcttaatttacttggtgttaaggg |
30707634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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