View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11648_low_4 (Length: 689)

Name: NF11648_low_4
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11648_low_4
NF11648_low_4
[»] chr3 (1 HSPs)
chr3 (22-675)||(44085628-44086281)


Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 22 - 675
Target Start/End: Complemental strand, 44086281 - 44085628
Alignment:
Q  22 aactatagttgccaccccatgaacctgacgcaaccatttaacagtacccaaacaagaacagttactcactatgctaacaagcgtgaactcgtctaacatc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44086281 aactatagttgccaccccatgaacctgacgcaaccatttaacagtatccaaacaagaacagttactcactaggctaacaagcgtgaactcgtctaacatc 44086182  T
Q  122 aaaacaccaacaccattttgcatctccctaaaaaatttaacagcttctttatgaaactcgtgacgtgttaaacctgatataagtgagttataactaacaa 221  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44086181 aaaccaccaacaccattttgcatctccctaaaaaatttaacagcttctttatgaaactcgtgacgtgttaaacctgatataagtgagttataactaacaa 44086082  T
Q  222 ggtttctttgcggcatttcatcgaacagtttataagcttgattgaaaactccnnnnnnngagtaaaatgagagcagcgtgttccacgtacgtgttgtctt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  44086081 ggtttctttgcggcatttcatcgaacagtttataagcttgattgaaaactcctttttttgagtaaaatgagagcagcgtgttccacgtacgtgttgtctt 44085982  T
Q  322 gttgggaagatcatcaaaggctttgtgaatactctttttacagccacatttggaatataaatcaatgagtccatttgcgagaaaagtttcaaagaaaagc 421  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44085981 gttgggaagatcatcaaaggctttgtgaatactctctttacagccacatttggaatataaatcaatgagtccgtttgcgagaaaagtttcaaagaaaagc 44085882  T
Q  422 gcggttttgatgagttgagagtgcaatgcttttccatgcttcaaacttttcgccgtaacacagtttgaaatcagagacgaaaatttctcgatcgtggaac 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44085881 gcggttttgatgagttgagagtgcaatgcttttccatgcttcaaacttttcgccgaaacacagtttgaaatcagagacgaaaatttctcgatcgtggaac 44085782  T
Q  522 tgaaatcattggtgtgaaacatcaccgtgtttctttctccgacaagaaagaacagaactggtttcgttagtgggtccagttgtcgtggnnnnnnnactgg 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  44085781 tgaaatcattggtgtgaaacatcaccgtgtttctttctccgacaagaaagaacagaactggtttcgttagtgggtccagttgtcgtggtttttttactgg 44085682  T
Q  622 gcaggattcaaaaatagaataattgataaattttagaccattacttttcgcacc 675  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44085681 gcaggattcaaaaatagaataattgataaattttagagcattacttttcgcacc 44085628  T

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