View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11648_low_42 (Length: 205)

Name: NF11648_low_42
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11648_low_42
NF11648_low_42
[»] chr5 (1 HSPs)
chr5 (49-188)||(11634380-11634520)
[»] scaffold0006 (1 HSPs)
scaffold0006 (33-78)||(38842-38887)
[»] chr1 (2 HSPs)
chr1 (33-78)||(31884487-31884532)
chr1 (33-77)||(50127376-50127420)
[»] scaffold0068 (1 HSPs)
scaffold0068 (33-77)||(52053-52097)
[»] chr4 (2 HSPs)
chr4 (36-71)||(3319284-3319319)
chr4 (33-77)||(19147176-19147220)
[»] chr3 (1 HSPs)
chr3 (33-78)||(43652496-43652541)
[»] scaffold0078 (1 HSPs)
scaffold0078 (33-77)||(890-934)
[»] chr7 (4 HSPs)
chr7 (33-77)||(8117472-8117516)
chr7 (33-77)||(16861718-16861762)
chr7 (33-77)||(21798838-21798882)
chr7 (33-77)||(41434742-41434786)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 11634380 - 11634520
Alignment:
Q  49 atgaaaaatgacaatttatatttccaagatnnnnnnnttatttttggattctttaactaatgctctagaggcaccgattagcaagattgtta-nnnnnnn 147  Q
    ||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||            
T  11634380 atgaaaaatgacaatttatatttccaagataaaaaaattatttttggattttttaactaatgctctagaggcaccgattagcaagattgttatttttttt 11634479  T
Q  148 ctctgaaaaaagtttattgttcttttaagtagctacggcct 188  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  11634480 ctctgaaaaaagtttattgctcttttaagtagctacagcct 11634520  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 38842 - 38887
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaagat 78  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||    
T  38842 atgtaattattacttgataaaaaatgacagtttatatttccaagat 38887  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 31884532 - 31884487
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaagat 78  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||    
T  31884532 atgtaattattatttgataaaaaatgtcagtttatatttccaagat 31884487  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 50127420 - 50127376
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    |||||||||||| | ||| |||||||||| |||||||||||||||    
T  50127420 atgtaattattactcgataaaaaatgacagtttatatttccaaga 50127376  T

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Target: scaffold0068 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 52053 - 52097
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    |||||||||||||||| | ||||||||||||||||||||| ||||    
T  52053 atgtaattattatttggtaaaaaatgacaatttatatttctaaga 52097  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 3319319 - 3319284
Alignment:
Q  36 taattattatttgatgaaaaatgacaatttatattt 71  Q
    |||||||||||||||||||||||||| |||||||||    
T  3319319 taattattatttgatgaaaaatgacagtttatattt 3319284  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 19147220 - 19147176
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    |||||||||||||||||| |||| ||||| ||||||||| |||||    
T  19147220 atgtaattattatttgataaaaagtgacagtttatattttcaaga 19147176  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 43652541 - 43652496
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaagat 78  Q
    ||||||||||||| |||| ||||||||||  |||||||||||||||    
T  43652541 atgtaattattatctgataaaaaatgacagattatatttccaagat 43652496  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 934 - 890
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    ||||||||||||||| || |||||||| | |||||||||||||||    
T  934 atgtaattattatttaataaaaaatgatagtttatatttccaaga 890  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 8117516 - 8117472
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    ||||||||||||||| || |||||| ||||||||||||| |||||    
T  8117516 atgtaattattatttaataaaaaataacaatttatattttcaaga 8117472  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 16861718 - 16861762
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    ||||||||| ||||| || |||||||||| |||||||||||||||    
T  16861718 atgtaattaatatttaataaaaaatgacagtttatatttccaaga 16861762  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 21798838 - 21798882
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    |||||||||||| || ||||||||||||| |||||| ||||||||    
T  21798838 atgtaattattacttaatgaaaaatgacagtttataattccaaga 21798882  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 41434742 - 41434786
Alignment:
Q  33 atgtaattattatttgatgaaaaatgacaatttatatttccaaga 77  Q
    |||||||||||||||||| |||| ||||| |||||||||| ||||    
T  41434742 atgtaattattatttgataaaaagtgacagtttatatttctaaga 41434786  T

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