View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11648_low_5 (Length: 585)

Name: NF11648_low_5
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11648_low_5
NF11648_low_5
[»] chr5 (7 HSPs)
chr5 (69-585)||(5205243-5205759)
chr5 (242-371)||(2243236-2243364)
chr5 (441-541)||(17739914-17740014)
chr5 (242-357)||(7215230-7215344)
chr5 (242-356)||(41264400-41264515)
chr5 (242-354)||(22780280-22780392)
chr5 (441-541)||(26105267-26105366)
[»] chr4 (4 HSPs)
chr4 (266-359)||(22050903-22050996)
chr4 (248-358)||(25062352-25062462)
chr4 (250-363)||(20512754-20512867)
chr4 (441-536)||(25062367-25062462)
[»] chr8 (10 HSPs)
chr8 (440-541)||(6630309-6630410)
chr8 (241-356)||(6630316-6630431)
chr8 (245-371)||(29969127-29969255)
chr8 (241-356)||(6803876-6803991)
chr8 (242-301)||(32166624-32166683)
chr8 (242-353)||(37010282-37010393)
chr8 (444-541)||(6803869-6803966)
chr8 (266-347)||(29093587-29093668)
chr8 (242-319)||(35574611-35574688)
chr8 (264-356)||(32166735-32166827)
[»] chr2 (10 HSPs)
chr2 (243-359)||(16576276-16576391)
chr2 (247-357)||(9050058-9050168)
chr2 (249-319)||(34176738-34176808)
chr2 (443-553)||(34176925-34177035)
chr2 (242-296)||(13712744-13712798)
chr2 (254-296)||(13712913-13712955)
chr2 (250-356)||(28282685-28282791)
chr2 (511-553)||(36168546-36168588)
chr2 (242-359)||(16863483-16863600)
chr2 (423-535)||(9050228-9050340)
[»] chr3 (6 HSPs)
chr3 (407-553)||(39341213-39341359)
chr3 (51-122)||(55277992-55278063)
chr3 (470-531)||(54028626-54028687)
chr3 (242-369)||(7938095-7938221)
chr3 (242-296)||(20519290-20519344)
chr3 (242-356)||(39341226-39341340)
[»] chr7 (7 HSPs)
chr7 (282-357)||(31152834-31152909)
chr7 (247-371)||(32962308-32962434)
chr7 (282-357)||(31171395-31171470)
chr7 (242-294)||(34891560-34891612)
chr7 (241-294)||(42012827-42012879)
chr7 (242-290)||(3191567-3191615)
chr7 (248-288)||(33362414-33362454)
[»] chr6 (2 HSPs)
chr6 (441-537)||(32047222-32047318)
chr6 (242-345)||(32342627-32342730)
[»] chr1 (7 HSPs)
chr1 (245-316)||(68127-68198)
chr1 (242-301)||(3367809-3367868)
chr1 (497-551)||(12144905-12144958)
chr1 (241-359)||(34601372-34601490)
chr1 (241-301)||(35957009-35957069)
chr1 (242-297)||(52432688-52432743)
chr1 (492-553)||(46081054-46081115)
[»] scaffold0136 (1 HSPs)
scaffold0136 (251-356)||(36907-37012)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 69 - 585
Target Start/End: Complemental strand, 5205759 - 5205243
Alignment:
Q  69 aatttgattgtaggtaggttgttgatgatgtgtctcatagtaaaattataagatcaatgtacaattctatcgtagaagattgtagaaaccattttatctt 168  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5205759 aatttgattgtaggtaggttgttgatgatgtgtctcttagtaaaattataagatcaatgtacaattctaccgtagaagattgtagaaaccattttatctt 5205660  T
Q  169 gccaaaacaattttcatgttgtttttattagtgttaaactaataataacattcatcccttagcagaggcccctatctcaagaacatcaaacttttttatc 268  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5205659 gccaaaacaattttcatgttgttttgtttagtgtcaaactaataataacattcatcccttagcagaggcccctatctcaaaaacatcaaacttttttatc 5205560  T
Q  269 tcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaattcatcaagggtaatatagg 368  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5205559 tcctttattaaacatgtgatctccatctatttcgttttataatcgaatcatgattgtcattaagggtaaaatacccccaattcatcaagggtaatatagg 5205460  T
Q  369 tcttactgtttagnnnnnnnnncttcttacttacaactagttaccatctttattttaaaaatatcaaaaaatttcatcttcttcattaaacatttgatat 468  Q
    |||||||||||||         ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5205459 tcttactgtttag-ttttttttcttcttacttacaactagttaccatctttattttaaaaacatcaaaaaatttcatcttcttcattaaacatttgatat 5205361  T
Q  469 tcatctacttcatttgaaaa-ttaaatcttacttatcattacggataaattaccctcaattcatcaaggggtaacatagatctcacattatgtacactac 567  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||    
T  5205360 tcatctacttcatttgaaaatttgaatcttacttatcattatggataaattatcatcaattcatcaaggggtaacgtagatctcacattatttacactac 5205261  T
Q  568 tttctagtcattcaatcc 585  Q
    ||||||||||||||||||    
T  5205260 tttctagtcattcaatcc 5205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 371
Target Start/End: Complemental strand, 2243364 - 2243236
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaata 341  Q
    |||||||||||||||||||| || || ||||| ||| ||||||||||||||||||  ||| ||  | ||||||||  |  |||||||||  |||||| ||    
T  2243364 atctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcattagaggtaaatta 2243265  T
Q  342 cccccaattcatcaagggtaatataggtct 371  Q
     |||||||||||||||||||||||| ||||    
T  2243264 -ccccaattcatcaagggtaatataagtct 2243236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 541
Target Start/End: Original strand, 17739914 - 17740014
Alignment:
Q  441 ttcatcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcatcaaggggta 540  Q
    ||||||||||||||| ||||| |||| ||||||| |||| ||  | |||  |||| ||||||| |||| |||| |||| | |||||||||||||||||||    
T  17739914 ttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatcaaggggta 17740013  T
Q  541 a 541  Q
    |    
T  17740014 a 17740014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 7215344 - 7215230
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaata 341  Q
    |||||||||||||||||||| ||| ||| ||| ||| || ||||||||||||||| |||| ||  | ||| |||||||  || ||||||| |||||| ||    
T  7215344 atctcaagaacatcaaacttcttt-tcttcttcattgaatatgtgatctccatctttttcattctaaaattgaatcatatttatcattaacggtaaatta 7215246  T
Q  342 cccccaattcatcaag 357  Q
    |||| |||||| ||||    
T  7215245 ccccgaattcaacaag 7215230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 41264400 - 41264515
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctt-tcataatcgaatcatgattgtcattaagggtaaaat 340  Q
    ||||||||||||| ||||||||| || |  || ||| |||||||||||| ||||| |||| || ||||||||||||||| ||||| ||||  |||||| |    
T  41264400 atctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgttatcataatcgaatcataattgttattagaggtaaatt 41264499  T
Q  341 acccccaattcatcaa 356  Q
    | ||  ||||||||||    
T  41264500 aaccttaattcatcaa 41264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 22780392 - 22780280
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaata 341  Q
    ||||||| ||||  |||||| || || ||||| ||| |||||||||||| ||||  |||| ||| | |||| ||||||  ||||||||| || |||| ||    
T  22780392 atctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatccctttcgttttagaatcaaatcatagttgtcattagggataaatta 22780293  T
Q  342 cccccaattcatc 354  Q
    || ||||||||||    
T  22780292 cctccaattcatc 22780280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 541
Target Start/End: Complemental strand, 26105366 - 26105267
Alignment:
Q  441 ttcatcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcatcaaggggta 540  Q
    |||||||||||| || ||||| ||||  |||||| |||| ||  | |||| ||||  |||| |||||| |||||||||||||  ||||||||||||||||    
T  26105366 ttcatcttcttcgttgaacatatgatcctcatct-cttcgttcaagaattgaatcccacttgtcattatggataaattaccccaaattcatcaaggggta 26105268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 22050903 - 22050996
Alignment:
Q  266 atctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaattcatcaaggg 359  Q
    |||||||| ||| |||||||||||| |||||  ||||||||| |||||||||||  || |||||||||||||| |||||||||||||| |||||    
T  22050903 atctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaagggtaaattacccccaattcataaaggg 22050996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 248 - 358
Target Start/End: Original strand, 25062352 - 25062462
Alignment:
Q  248 agaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaataccccca 347  Q
    |||||||||||||| || |||| ||| |||||||||||||||| |||||  ||  || ||||||| |||| |  |||| |||| ||||||| ||||| ||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctca 25062451  T
Q  348 attcatcaagg 358  Q
    |||||||||||    
T  25062452 attcatcaagg 25062462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 20512867 - 20512754
Alignment:
Q  250 aacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaat 349  Q
    |||||||||||| || |||| ||| ||| ||||||| |||||||| |  ||| |||||||||||||||||  |||| | ||||| |||  |||| |||||    
T  20512867 aacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatcatatttgttagtaaggataatttacctccaat 20512768  T
Q  350 tcatcaagggtaat 363  Q
    |||| |||||||||    
T  20512767 tcattaagggtaat 20512754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 536
Target Start/End: Original strand, 25062367 - 25062462
Alignment:
Q  441 ttcatcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcatcaagg 536  Q
    ||||||| ||||||||||||| |||| ||||||| |||  ||  | ||| ||||| ||||| | |||| || ||||||||||||||||||||||||    
T  25062367 ttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatcaagg 25062462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 440 - 541
Target Start/End: Complemental strand, 6630410 - 6630309
Alignment:
Q  440 tttcatcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcatcaaggggt 539  Q
    ||||||||| |||||| ||||| || ||| ||||| |||||||| ||||| ||||| ||||| |||||| || |||||||| ||||||||||||| ||||    
T  6630410 tttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaaagggt 6630311  T
Q  540 aa 541  Q
    ||    
T  6630310 aa 6630309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 6630431 - 6630316
Alignment:
Q  241 tatctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaat 340  Q
    |||||||||||||||||||||||| ||||  || ||| |||||||| | |||||||  ||| ||||| |||| |||| |  ||||||||| ||||||| |    
T  6630431 tatctcaagaacatcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaatt 6630332  T
Q  341 acccccaattcatcaa 356  Q
    || | |||||||||||    
T  6630331 actctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 371
Target Start/End: Original strand, 29969127 - 29969255
Alignment:
Q  245 tcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaa-gggtaaaatacc 343  Q
    ||||||||||||||||| ||  || |||| ||| |||||||||| | ||||| |||| || |||||||||||  |  |||||||||| ||||||| || |    
T  29969127 tcaagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaaggggtaaattatc 29969226  T
Q  344 cccaattcatcaa-gggtaatataggtct 371  Q
    | ||||||||||| ||||||| |||||||    
T  29969227 cacaattcatcaaggggtaatgtaggtct 29969255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 6803991 - 6803876
Alignment:
Q  241 tatctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaat 340  Q
    |||||||| |||||||||||| |||||||  || ||| | |||||| | |||||||  ||| ||||| |||| |||| |  ||||||||| ||||||| |    
T  6803991 tatctcaaaaacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaatt 6803892  T
Q  341 acccccaattcatcaa 356  Q
    || |||||||||||||    
T  6803891 actcccaattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 32166683 - 32166624
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttc 301  Q
    |||||||||||||||||||| || |||||||||||| ||||||| |||| ||||| ||||    
T  32166683 atctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttc 32166624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 353
Target Start/End: Complemental strand, 37010393 - 37010282
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaata 341  Q
    ||||||| |||||||||||| || || || || ||| ||||||||||||| ||||  ||| || ||||||||||||||  |||| |||| ||| ||  ||    
T  37010393 atctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattccataatcgaatcatatttgttattaggggcaattta 37010294  T
Q  342 cccccaattcat 353  Q
    ||||||||||||    
T  37010293 cccccaattcat 37010282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 541
Target Start/End: Complemental strand, 6803966 - 6803869
Alignment:
Q  444 atcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcatcaaggggtaa 541  Q
    ||||| |||||| | ||| || ||| ||||| |||||||| ||||| ||||| ||||| |||||| || |||||||| | ||||||||||| ||||||    
T  6803966 atctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactcccaattcatcaaagggtaa 6803869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 29093587 - 29093668
Alignment:
Q  266 atctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaataccccca 347  Q
    |||||||| ||| |||||||||||||||||| |||| || ||||||| ||||||  |||  ||| |||||||| ||||||||    
T  29093587 atctccttcattcaacatgtgatctccatctctttcgttccataatcaaatcatacttggtattgagggtaaattaccccca 29093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 35574688 - 35574611
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcat 319  Q
    |||| |||||||||||| ||||| ||||| || ||| ||||||| |||||||||| |||| || || |||||||||||    
T  35574688 atcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatcat 35574611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 32166827 - 32166735
Alignment:
Q  264 ttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaattcatcaa 356  Q
    |||||| ||| ||| |||||||||| | ||||| |||| || || ||||||||| |  |||||||||  |||||| ||| |||||||||||||    
T  32166827 ttatcttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaa 32166735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 359
Target Start/End: Original strand, 16576276 - 16576391
Alignment:
Q  243 tctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatac 342  Q
    ||||||||||||||||||| || |||||||| ||| |||||||||||||| |||  ||| || || |||||||||||  || |||||| ||||||| ||     
T  16576276 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaatta- 16576374  T
Q  343 ccccaattcatcaaggg 359  Q
     ||||||||||||||||    
T  16576375 acccaattcatcaaggg 16576391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 9050168 - 9050058
Alignment:
Q  247 aagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaataccccc 346  Q
    ||||||| ||||||| || |||||| | ||| ||||| ||||||||||||  ||| || || |||||||||||| ||||||||||||||||| ||| | |    
T  9050168 aagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatcatgcttgtcattaagggtaaattactctc 9050069  T
Q  347 aattcatcaag 357  Q
    |||| ||||||    
T  9050068 aatttatcaag 9050058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 34176738 - 34176808
Alignment:
Q  249 gaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcat 319  Q
    |||||||||| || || |||||||| ||| ||||| |||||| ||||| |||| |||||||||||||||||    
T  34176738 gaacatcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgtttcataatcgaatcat 34176808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 553
Target Start/End: Original strand, 34176925 - 34177035
Alignment:
Q  443 catcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcatcaaggggtaac 542  Q
    ||||||||||||| ||||| |||||||||||  |||||||| | |||| ||||||| || | |||| || |||||||||   |||||||||| | ||||     
T  34176925 catcttcttcattcaacatgtgatattcatcctcttcatttcagaattgaatcttatttgttattaagggtaaattacctctaattcatcaatgcgtaat 34177024  T
Q  543 atagatctcac 553  Q
     ||||||||||    
T  34177025 gtagatctcac 34177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 13712798 - 13712744
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatct 296  Q
    |||| ||||||||||||||| ||||||| ||||||| ||||| | ||||||||||    
T  13712798 atcttaagaacatcaaacttctttatcttctttattcaacatctaatctccatct 13712744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 13712955 - 13712913
Alignment:
Q  254 tcaaacttttttatctcctttattaaacatgtgatctccatct 296  Q
    |||||||||||||||||||| ||| |||||||||||| |||||    
T  13712955 tcaaacttttttatctccttcatttaacatgtgatctacatct 13712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 28282685 - 28282791
Alignment:
Q  250 aacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaat 349  Q
    |||||||||||| ||||||| ||| ||| || |||||||||||||||  ||| || ||||||| |||  |  |||| |||| ||||||| ||||  ||||    
T  28282685 aacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattaggggtaaattaccgtcaat 28282784  T
Q  350 tcatcaa 356  Q
    |||||||    
T  28282785 tcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 553
Target Start/End: Complemental strand, 36168588 - 36168546
Alignment:
Q  511 gataaattaccctcaattcatcaaggggtaacatagatctcac 553  Q
    ||||||||||||  |||||||||| ||||||||||||||||||    
T  36168588 gataaattacccctaattcatcaaagggtaacatagatctcac 36168546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 16863483 - 16863600
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaata 341  Q
    ||||||||||||||||| || || |||| ||||||| || ||||||||| |||||  ||| ||  | ||||||||| |  |||||||| || ||||| ||    
T  16863483 atctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatcctacttgtcattgagcgtaaatta 16863582  T
Q  342 cccccaattcatcaaggg 359  Q
    |||| ||||  |||||||    
T  16863583 ccccaaattattcaaggg 16863600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 535
Target Start/End: Complemental strand, 9050340 - 9050228
Alignment:
Q  423 ttaaaaatatcaaaaaatttcatcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccc 522  Q
    |||||||||||||  | ||||||||  |||||| |||||||||| | ||||| |||  ||| | |||  |||| ||||  ||||||  | ||||||||||    
T  9050340 ttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcattagaggtaaattaccc 9050241  T
Q  523 tcaattcatcaag 535  Q
    |||||||||||||    
T  9050240 tcaattcatcaag 9050228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 553
Target Start/End: Original strand, 39341213 - 39341359
Alignment:
Q  407 agttaccatctttattttaaaaatatcaaaaaatttcatcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcat 506  Q
    ||||||||| || || |||| |||||||||   |||||||| ||||||| |||||  ||| | ||| |||||| ||  |||||| ||||||| |||||||    
T  39341213 agttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttatcat 39341312  T
Q  507 tacggataaattaccctcaattcatcaaggggtaacatagatctcac 553  Q
    ||  | ||||||||||  |||||||||| |||||||||||| |||||    
T  39341313 tagaggtaaattacccctaattcatcaaagggtaacatagacctcac 39341359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 55278063 - 55277992
Alignment:
Q  51 ttcaaaatgtcatttttaaatttgattgtaggtaggttgttgatgatgtgtctcatagtaaaattataagat 122  Q
    |||||||| |||||||| || ||||||||| | || |||||| ||||||||||| ||||||||| |||||||    
T  55278063 ttcaaaatatcatttttgaacttgattgtaagcagcttgttgttgatgtgtctcgtagtaaaatcataagat 55277992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 531
Target Start/End: Original strand, 54028626 - 54028687
Alignment:
Q  470 catctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcat 531  Q
    ||||| |||||||| | |||| |||| || ||||||||| ||||||||||||||||||||||    
T  54028626 catctccttcatttcataattgaatcatatttatcattagggataaattaccctcaattcat 54028687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 7938095 - 7938221
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatcta-tttcctttcataatcgaatcatgattgtcattaagggtaaaat 340  Q
    ||||||| ||||||||| |||||||||||||| ||| |||||| ||||||| | |  ||| || | | ||||||||| |  || |||||||||||||| |    
T  7938095 atctcaaaaacatcaaa-ttttttatctccttcattcaacatgcgatctccgttttctttgctct-agaatcgaatcttatttatcattaagggtaaatt 7938192  T
Q  341 acccccaattcatcaagggtaatataggt 369  Q
    || | |||||||||||||||||| |||||    
T  7938193 acacgcaattcatcaagggtaatgtaggt 7938221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 20519344 - 20519290
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatct 296  Q
    ||||||||||| ||||| || || ||||| || ||||||||||||||||||||||    
T  20519344 atctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatct 20519290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 39341226 - 39341340
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaata 341  Q
    |||| ||||| |||||||||||| |||||||| ||| |||||| ||||||||| || ||| ||  | ||| ||||| |  || ||||||  |||||| ||    
T  39341226 atcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttatcattagaggtaaatta 39341325  T
Q  342 cccccaattcatcaa 356  Q
    |||| ||||||||||    
T  39341326 cccctaattcatcaa 39341340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 31152909 - 31152834
Alignment:
Q  282 atgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaattcatcaag 357  Q
    ||||||||||||||| |||| ||||||||||||||| |  |||| ||||  |||||| ||||||||||||||||||    
T  31152909 atgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaag 31152834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 247 - 371
Target Start/End: Complemental strand, 32962434 - 32962308
Alignment:
Q  247 aagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcatta-agggtaaaatacccc 345  Q
    ||||| |||||||||||| |||||||||||| ||||| |||||| ||| | |||  ||||| |||||||||||  || |||||| ||  |||| |||| |    
T  32962434 aagaaaatcaaactttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttatcattatagaataaattacctc 32962335  T
Q  346 caattcatcaa-gggtaatataggtct 371  Q
    ||||||||||| ||||||| |||||||    
T  32962334 caattcatcaaggggtaatgtaggtct 32962308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 31171470 - 31171395
Alignment:
Q  282 atgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaattcatcaag 357  Q
    ||||||| ||||||| |||| ||||||||||||||| |  |||| ||||  |||||| ||||||||||||||||||    
T  31171470 atgtgatttccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaag 31171395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 34891560 - 34891612
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccat 294  Q
    ||||||||||||||||| || || |||||||| ||| ||||||||||||||||    
T  34891560 atctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 42012827 - 42012879
Alignment:
Q  241 tatctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccat 294  Q
    |||| ||||||||||||||||||| ||||  |||||| ||||||||||||||||    
T  42012827 tatcacaagaacatcaaactttttcatct-atttattcaacatgtgatctccat 42012879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 3191615 - 3191567
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatct 290  Q
    ||||||| ||||||||| || || |||||||||||| ||||||||||||    
T  3191615 atctcaaaaacatcaaagttcttcatctcctttattcaacatgtgatct 3191567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 33362454 - 33362414
Alignment:
Q  248 agaacatcaaacttttttatctcctttattaaacatgtgat 288  Q
    ||||||||||||||||| |||||||| ||| ||||||||||    
T  33362454 agaacatcaaactttttaatctccttcattcaacatgtgat 33362414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 537
Target Start/End: Original strand, 32047222 - 32047318
Alignment:
Q  441 ttcatcttcttcattaaacatttgatattcatctacttcatttgaaaattaaatcttacttatcattacggataaattaccctcaattcatcaaggg 537  Q
    |||||||  |||||| ||||| |||||||| ||| |||||||  | |||| |||| ||||||||||||  | ||||||| |||||||||||||||||    
T  32047222 ttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcattagaggtaaattatcctcaattcatcaaggg 32047318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 32342627 - 32342730
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaata 341  Q
    ||||||| ||||||||||||||| ||||| || ||| |||||| |||||| || | |||| || || |||| ||||||  || ||||||||| |||| ||    
T  32342627 atctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatcatatttatcattaaggataaatta 32342726  T
Q  342 cccc 345  Q
    ||||    
T  32342727 cccc 32342730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 68127 - 68198
Alignment:
Q  245 tcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaat 316  Q
    ||||||||||| ||||| || |||||||| ||| |||||||||||||||||| |||| || || ||||||||    
T  68127 tcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 3367809 - 3367868
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttc 301  Q
    ||||||||||||||||| ||||| ||||| || ||| |||||||||||||||||| ||||    
T  3367809 atctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttc 3367868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 551
Target Start/End: Original strand, 12144905 - 12144958
Alignment:
Q  497 tacttatcattacggataaattaccctcaattcatcaaggggtaacatagatctc 551  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||    
T  12144905 tacttatcattatggataaattacc-tcaattcatcaaggggtaacgtaggtctc 12144958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 34601490 - 34601372
Alignment:
Q  241 tatctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaat 340  Q
    ||||| |||||||||||||||  | |||||||||||| |||||||||| |||||||   || ||  || ||| |||||| |||||||| |  |||||| |    
T  34601490 tatcttaagaacatcaaacttcctcatctcctttattcaacatgtgatttccatcttcatcattctatgatcaaatcataattgtcataagaggtaaatt 34601391  T
Q  341 acccccaattcatcaaggg 359  Q
    ||| ||||||||| |||||    
T  34601390 accaccaattcattaaggg 34601372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 35957009 - 35957069
Alignment:
Q  241 tatctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttc 301  Q
    |||||||| ||||||||||||||  || || |||||| || ||||||||||||||||||||    
T  35957009 tatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatctatttc 35957069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 52432688 - 52432743
Alignment:
Q  242 atctcaagaacatcaaacttttttatctcctttattaaacatgtgatctccatcta 297  Q
    ||||||||||||| |||||| || |||||||| ||| |||| ||||||||||||||    
T  52432688 atctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatcta 52432743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 553
Target Start/End: Original strand, 46081054 - 46081115
Alignment:
Q  492 aatcttacttatcattacggataaattaccctcaattcatcaaggggtaacatagatctcac 553  Q
    |||| |||||||||||| |  |||||||||| ||||||||||| ||||||| |||| |||||    
T  46081054 aatcgtacttatcattaagagtaaattacccccaattcatcaaagggtaacgtagacctcac 46081115  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 37012 - 36907
Alignment:
Q  251 acatcaaacttttttatctcctttattaaacatgtgatctccatctatttcctttcataatcgaatcatgattgtcattaagggtaaaatacccccaatt 350  Q
    |||||||| || || ||||| |||||| |||||||||||| |||||  ||  ||||||||||||||| |  || | |||| | ||||| |||| ||||||    
T  37012 acatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctacttattattatgtgtaaattacctccaatt 36913  T
Q  351 catcaa 356  Q
    ||||||    
T  36912 catcaa 36907  T

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