View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11648_low_8 (Length: 458)
Name: NF11648_low_8
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 22 - 451
Target Start/End: Complemental strand, 26600108 - 26599679
Alignment:
| Q |
22 |
aaggtgaagaaccatgatcattcctttgaagtttcacaatctcttctctttgatcattaacatcacaataaccacttccttgattgtacatagaacattg |
121 |
Q |
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| T |
26600108 |
aaggtgaagaaccatgatcattcctttgaagtttcacaatctcctctctttgatcattaacatcacaataaccacttccttgattgtacatagaacattg |
26600009 |
T |
|
| Q |
122 |
ttcattattgttgaagtaaaaactctcctttctctttctgtttccttctttagaatcatcccttggagtacaattatcagaacctctcacagtactattc |
221 |
Q |
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| T |
26600008 |
ttcattattgttgaagtaaaaactctcctttctctttctgtttccttctttagaatcatcccttggagtacaattatcagaacctctcacagtactattc |
26599909 |
T |
|
| Q |
222 |
aagatttcactcccatcttcattttgattttgaatctctgctccagttattacatttacacccttatgatcatgagcttcttcaaccttaaccatttctc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26599908 |
aagatttcactcccatcttcattttgattttgaatctctgctccagttattacatttacacccttatgatcatgagcttcttcaaccttaaccatttctc |
26599809 |
T |
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| Q |
322 |
tacctcctaaattcttcaaagcttccattaaagcagcatcccttgcttcaatccatgctctctcattactccaaaacttttgttctttttctaccctttt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26599808 |
tacctcctaaattcttcaaagcttccattaaagcagcatcccttgcttcaatccatgctctctcattactccaaaacttttgttctttttctaccctttt |
26599709 |
T |
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| Q |
422 |
ggcctcttgtttcctccactcttcttctct |
451 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26599708 |
ggcctcttgtttcctccactcttcttctct |
26599679 |
T |
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