View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11648_low_9 (Length: 431)
Name: NF11648_low_9
Description: NF11648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11648_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 10239686 - 10239931
Alignment:
| Q |
1 |
aaagggatgggaatgtccacgtggaggggactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttg |
100 |
Q |
| |
|
|||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239686 |
aaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttg |
10239785 |
T |
|
| Q |
101 |
cattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10239786 |
cattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgt |
10239885 |
T |
|
| Q |
201 |
tgataatgtcatcgagtgtgttgagtattagtgctgatattgatga |
246 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10239886 |
tgatgatgtcatcgagtgtgttgagtattagtgctgagattgatga |
10239931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 10254905 - 10254684
Alignment:
| Q |
15 |
gtccacgtggaggggactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagg |
114 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254905 |
gtccacgtggaaggaactgtgggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagg |
10254806 |
T |
|
| Q |
115 |
gagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgataatgtcatcg |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
10254805 |
gagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtcgtcg |
10254706 |
T |
|
| Q |
215 |
agtgtgttgagtattagtgctg |
236 |
Q |
| |
|
| |||||||| || |||||||| |
|
|
| T |
10254705 |
aatgtgttgaatagtagtgctg |
10254684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 10230920 - 10231151
Alignment:
| Q |
15 |
gtccacgtggaggggactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagg |
114 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||| |||| | |||||||||||||| |
|
|
| T |
10230920 |
gtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattgtgttggagg |
10231019 |
T |
|
| Q |
115 |
gagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgataatgtcatcg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10231020 |
gagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgataatgtcatcg |
10231119 |
T |
|
| Q |
215 |
agtgtgttgagtattagtgctgatattgatga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10231120 |
agtgtgttgagtattagtgctgatattgatga |
10231151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 309 - 416
Target Start/End: Original strand, 10231214 - 10231321
Alignment:
| Q |
309 |
caggggaaccggttcttagtgtctcatgaggttgtgatgtttggggtttttcttgggttctgacgaatgctatgttaaattgagggataggaattgtggg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231214 |
caggggaaccggttcttagtgtctcatgaggttgtgatgtttggggtttttcttgggttctgacgaatgctatgttaaattgagggataggaattgtggg |
10231313 |
T |
|
| Q |
409 |
tggttgtt |
416 |
Q |
| |
|
|||||||| |
|
|
| T |
10231314 |
tggttgtt |
10231321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 10240025 - 10240104
Alignment:
| Q |
337 |
aggttgtgatgtttggggtttttcttgggttctgacgaatgctatgttaaattgagggataggaattgtgggtggttgtt |
416 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
10240025 |
aggttgtgatgtttgaggtttttctttggttctgacggatgctgtgttaaattgagggatataagttgtgggtggttgtt |
10240104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University