View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11649_high_1 (Length: 822)
Name: NF11649_high_1
Description: NF11649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11649_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 756; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 18 - 805
Target Start/End: Original strand, 37880406 - 37881193
Alignment:
| Q |
18 |
acatcacgacaacaaattattcctaatgaccccaaaattaaataacaccaagaataaagaatgcaaactaaaagtttacatacatctaattctacaatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37880406 |
acatcacgacaacaaattattcctaatgaccccaaaattaaataacaccaagaataaagaatgcaaactaaaagtttacatacatctaattctacaatgc |
37880505 |
T |
|
| Q |
118 |
gcaagtgacgtaagtcttgcatcatgcataaattaactttcgctatttgatcaataaaacatactattagatttattgatccaataatgaaaaataaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37880506 |
gcaagtgacgtaagtcttgcatcatgcataaattaactttcgctatttgatcaataaaacatactattagatttattgatccaataatgaaaaataaact |
37880605 |
T |
|
| Q |
218 |
cgtgcacgatacaaaactatattacttgtgcatattgaacaaagtttgcaatcgtatatacacacatttacaagaaatcattaatatccaaagtactctc |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37880606 |
cgtgcacgatacaaaactatcttacttgttcatattaaacaaagtctgcaatcgtatatacacacatttacaagaaatcattaatatccaaagtactctc |
37880705 |
T |
|
| Q |
318 |
cggaatttcgaacttgaatatgtcactgcaatatgtatccctctcttcctctgtgcagctattcacataagttggtgatggagttggtgtcgtcgataaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37880706 |
cggaatttcgaacttgaatatgtcactgcaatatgtatccctctcttcctctgtgcagctattcacataagttggtgatggagttggtgtcgtcgataaa |
37880805 |
T |
|
| Q |
418 |
ggcgtagtcgatataactgattcatatcccatactgtttttgtttccatcattatttaggcaatgaaacaattctgaatattgtttagaaatcaagtcct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37880806 |
ggcgtagtcgatataactgattcatatcccatactgtttttgtttccatcattatttaggcaatgaaacaattctgaatattgtttagaaatcaagtcct |
37880905 |
T |
|
| Q |
518 |
ctccaaaataacaaggatttgtattttcagctgaacttgaacaactcatgtttccaaataagccattattcacattgtgagtttgagttggtatttgaaa |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37880906 |
ctccaaaataacaaggatttgtattttcagctgaacttgaacaactcatgtttcctaataagccattattcacattgtgtgtttgagttggtatttgaaa |
37881005 |
T |
|
| Q |
618 |
ttgatcttgattgtaaacttgattttgcacttgttgttgagtaccattagcagcattattgatttgttgttgattatgcgaacccaaatttatgttgttg |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881006 |
ttgatcttgattgtaaacttgattttgcacttgttgttgagtaccattagcagcattattgatttgttgttgattatgcgaacccaaatttatgttgttg |
37881105 |
T |
|
| Q |
718 |
tttaataatgtggcagttgcagctagctttaacaattcagggttcatgaaagcttgagcaccacctaataagttcagaaatgatgggt |
805 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881106 |
tttaataatgtggccgttgcagctagctttaacaattcagggttcatgaaagcttgagcaccacctaataagttcagaaatgatgggt |
37881193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 38318068 - 38318114
Alignment:
| Q |
129 |
aagtcttgcatcatgcataaattaactttcgctatttgatcaataaa |
175 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
38318068 |
aagtcttgcatcatatataaattagctttcactatttgatcaataaa |
38318114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 26219827 - 26219789
Alignment:
| Q |
114 |
atacgcaagtgacgtaagtcttgcatcatgcataaatta |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26219827 |
atacgcaagtgagataagtcttgcatcatgcataaatta |
26219789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University