View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11649_high_3 (Length: 461)

Name: NF11649_high_3
Description: NF11649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11649_high_3
NF11649_high_3
[»] chr4 (5 HSPs)
chr4 (19-440)||(43108157-43108579)
chr4 (253-394)||(3342933-3343073)
chr4 (364-440)||(3343737-3343814)
chr4 (268-305)||(1607955-1607992)
chr4 (253-309)||(10982557-10982613)
[»] chr7 (4 HSPs)
chr7 (185-440)||(31861012-31861267)
chr7 (251-435)||(28950442-28950625)
chr7 (363-444)||(35153728-35153810)
chr7 (365-440)||(35153615-35153691)
[»] chr8 (1 HSPs)
chr8 (203-417)||(9321376-9321590)
[»] chr2 (5 HSPs)
chr2 (235-440)||(35711688-35711893)
chr2 (225-395)||(38179739-38179908)
chr2 (318-392)||(18483809-18483883)
chr2 (251-305)||(29939597-29939651)
chr2 (383-431)||(11879960-11880009)
[»] chr5 (3 HSPs)
chr5 (235-440)||(10927767-10927971)
chr5 (341-420)||(30840222-30840302)
chr5 (375-446)||(12513125-12513197)
[»] chr1 (1 HSPs)
chr1 (203-424)||(9846252-9846473)
[»] chr6 (2 HSPs)
chr6 (235-289)||(11007941-11007995)
chr6 (330-423)||(8037658-8037751)
[»] chr3 (1 HSPs)
chr3 (270-410)||(25203670-25203811)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 43108579 - 43108157
Alignment:
Q  19 ggaccaaaagagcatttaa-ccaaattgatttataaatcatataaatctttgtttgatctacacatattaggtcaaaaggggagggcaaagaggatccat 117  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43108579 ggaccaaaagagcatttaagcctaattgatttataaatcatataaatctttgtttgatctacacatattaggtcaaaaggggagggcaaagaggatccat 43108480  T
Q  118 aagaaaaagatagaaggttgtgattgaagaggtaagaagatagacaccctttttagaagnnnnnnn-gagatgatagagagcgaatgtttaggtgagttc 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||||| ||||||||||||||||| |||||||||    
T  43108479 aagaaaaagatagaaggttgtaattgaagaggtaagaagatagacacccttttcagaagaaaaaaaagagatcatagagagcgaatgttttggtgagttc 43108380  T
Q  217 gtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatac 316  Q
    |||||||||| ||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43108379 gtgaaaaggaaatagggatgagaatcatgagggaagaagaaagagatatgttt-attgcatgaataacatttgctttgttgcatgtaatcctcttgatac 43108281  T
Q  317 ctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattctt 416  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43108280 ctggtttactgcgtggataacaattgggttgttgcatgcattcctcgtgacatttgggttattgtatgggtaacacttgattgatgcatgtattattctt 43108181  T
Q  417 gacacttgacttgttgcatatatt 440  Q
    ||||||||||||||||||| ||||    
T  43108180 gacacttgacttgttgcatgtatt 43108157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 253 - 394
Target Start/End: Original strand, 3342933 - 3343073
Alignment:
Q  253 aagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgca 352  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||| || |  ||||||||||| ||||||||||||| | |||||||    
T  3342933 aagaaagagatatgttttattgcatgaataacatgtggttttttgcatgtaattctctagaca-ttggtttactgcatggataacaattgcggtgttgca 3343031  T
Q  353 ggcattcctcgtgacatttgagttattgtatgggtaacactt 394  Q
     | |||  || ||||| |||  || ||| |||||||||||||    
T  3343032 tgtatttttcttgacaattgttttgttgcatgggtaacactt 3343073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 3343737 - 3343814
Alignment:
Q  364 tgacatttgagttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatatt 440  Q
    |||||||||  |||||| ||||||||||||||| ||| ||||||||||  ||||||||||||  ||||||||| ||||    
T  3343737 tgacatttggtttattgcatgggtaacacttgacttgctgcatgtattcatcttgacacttggtttgttgcatgtatt 3343814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 1607955 - 1607992
Alignment:
Q  268 tttattgcatgaataacatttgctttgttgcatgtaat 305  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  1607955 tttattgcataaataacatttgatttgttgcatgtaat 1607992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 10982613 - 10982557
Alignment:
Q  253 aagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctc 309  Q
    |||||||| |||| |||||  |||||||||| |||||  ||||||||||||||||||    
T  10982613 aagaaagaaatatattttaaagcatgaataatatttggcttgttgcatgtaatcctc 10982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 185 - 440
Target Start/End: Complemental strand, 31861267 - 31861012
Alignment:
Q  185 agatgatagagagcgaatgtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataac 284  Q
    ||||||||||||| |   |||| ||||||||| ||| || ||||   || ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  31861267 agatgatagagagtgggggttttggtgagttcatgagaaagagagggggttgagatttatgagggaagaagaaagagatatgttttattgcatgaataac 31861168  T
Q  285 atttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatg 384  Q
    ||||| ||||||||||||||||||||||| || || |||||| | || ||||||||| ||||||||||  |||||||| ||| ||||| |||||||||||    
T  31861167 atttggtttgttgcatgtaatcctcttgacacttgatttactacatgaataacaattaggttgttgcatacattcctcatgatatttgggttattgtatg 31861068  T
Q  385 ggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcatatatt 440  Q
    | ||||||||| ||  |||| ||||| |||| |||||||| |||||||||| ||||    
T  31861067 gataacacttggtttctgcacgtattcttctcgacacttggcttgttgcatgtatt 31861012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 435
Target Start/End: Original strand, 28950442 - 28950625
Alignment:
Q  251 agaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttg 350  Q
    |||||||||||||||||||||||| |||||||||| |||  || |||||||||||| |  ||| || |  |||||||| |||||||||||||  ||||||    
T  28950442 agaagaaagagatatgttttattgtatgaataacacttgacttcttgcatgtaatcttaatgacacttt-tttactgcatggataacaattgaattgttg 28950540  T
Q  351 caggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcat 435  Q
    || |||||| || ||||||||||||||||| ||| |||||||||| ||| |||||||| |  ||||||||||||| |||||||||    
T  28950541 catgcattcgtcatgacatttgagttattgcatgagtaacacttggttgttgcatgtactcctcttgacacttgatttgttgcat 28950625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 35153810 - 35153728
Alignment:
Q  363 gtgacatttgagttattgtatgggtaacacttg-attgatgcatgtattattcttgacacttgacttgttgcatatattattc 444  Q
    |||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  35153810 gtgacagttgatttattgtatgggtaacacttggatcgatgcatgtattattcttgacacttgacttgttacacgtattattc 35153728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 440
Target Start/End: Complemental strand, 35153691 - 35153615
Alignment:
Q  365 gacatttgagttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatatt 440  Q
    |||| |||| |||||| | ||||||||||||| ||| ||||| ||||  ||||||||||||||| ||||||| ||||    
T  35153691 gacacttgatttattgcacgggtaacacttgacttgctgcatatatttctcttgacacttgactggttgcatgtatt 35153615  T

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Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 203 - 417
Target Start/End: Original strand, 9321376 - 9321590
Alignment:
Q  203 gtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgt 302  Q
    |||| ||||||||||||| || |||||  || || ||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||| || |    
T  9321376 gttttggtgagttcgtgagaaagagatgaggttgggattcatgaaggaggaagaaagagatatgttttattgcatgaataacatttgccttgttgaatat 9321475  T
Q  303 aatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatg 402  Q
    ||||||||||| |  | ||||  ||| |||||||||||| |||||||||| |||||||| | |||||||||||||||| |||||||||||||| ||| ||    
T  9321476 aatcctcttgacatttagtttgttgcatggataacaattaggttgttgcaagcattccttgagacatttgagttattgcatgggtaacacttggttgttg 9321575  T
Q  403 catgtattattcttg 417  Q
    |||||||| ||||||    
T  9321576 catgtattcttcttg 9321590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 235 - 440
Target Start/End: Complemental strand, 35711893 - 35711688
Alignment:
Q  235 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggat 334  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||  |||||| ||||| ||||||||| |  ||||| ||||  |||||    
T  35711893 tgagattcatgagggaagaagaaaaatatatgttttattgcatgaataacatttggcttgttgtatgtattcctcttgacatttggttaactggatggat 35711794  T
Q  335 aacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgca 434  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||| | ||| |||| |||||  ||||||||||||  ||||||||    
T  35711793 aacaattggcttgttgcatgcattcctcgtgacatttgggttattgcatgggtaacactaggttgttgcaagtattgatcttgacacttggtttgttgca 35711694  T
Q  435 tatatt 440  Q
    | ||||    
T  35711693 tgtatt 35711688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 38179908 - 38179739
Alignment:
Q  225 gagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggttta 324  Q
    |||| |||| || ||||||||||  || ||||||||||||||||||||||||||  |||||||||  ||||||||||||||| ||| ||||| ||||||     
T  38179908 gagagatggttgggattcatgagtgaaaaagaaagagatatgttttattgcatgtgtaacatttgacttgttgcatgtaatcttctcgatacttggttt- 38179810  T
Q  325 ctgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttg 395  Q
    |||| ||||||| ||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||||||    
T  38179809 ctgcatggataaaaattgggttgttgcatgcattcctcatgacgtttgagttattgaatgagtaacacttg 38179739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 18483809 - 18483883
Alignment:
Q  318 tggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacac 392  Q
    ||||||||||| ||||| | |||||||||| |||| |||||| |  ||||||||| ||||||| |||||||||||    
T  18483809 tggtttactgcatggatgataattgggttgctgcatgcattctttatgacatttgggttattgaatgggtaacac 18483883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 29939597 - 29939651
Alignment:
Q  251 agaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaat 305  Q
    |||||||||||||||  ||||||| ||||||||||||||| || |||||||||||    
T  29939597 agaagaaagagatatagtttattgaatgaataacatttgccttattgcatgtaat 29939651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 11879960 - 11880009
Alignment:
Q  383 tgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgtt 431  Q
    |||||||||||||  ||||||||||||||  |||||||||||||||||||    
T  11879960 tgggtaacacttggcttgatgcatgtattcctcttgacacttgacttgtt 11880009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 440
Target Start/End: Original strand, 10927767 - 10927971
Alignment:
Q  235 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggat 334  Q
    |||||||||| | | || |||||||||| |||||||| || |||||||| |||||  ||||||  ||||||||| |||| || |  |||| ||| |||||    
T  10927767 tgagattcatcaaggaaaaagaaagagacatgttttactgtatgaataatatttggcttgttgtctgtaatcctattgacactta-tttaatgcatggat 10927865  T
Q  335 aacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgca 434  Q
    |||||||| ||||||||| ||||| ||| | ||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||| ||||||||    
T  10927866 aacaattgagttgttgcatgcatttctcataacatttgagttattgcatgggtaacacttggtcgatgcatgtattcttcttgacacttgatttgttgca 10927965  T
Q  435 tatatt 440  Q
    ||||||    
T  10927966 tatatt 10927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 30840222 - 30840302
Alignment:
Q  341 tgggttgttgcaggcatt-cctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgaca 420  Q
    |||||||||||| ||||| |||||||||||||| ||||| | |||||||||||||| ||| |||||||||| |||||||||    
T  30840222 tgggttgttgcatgcatttcctcgtgacatttgggttatggcatgggtaacacttggttgttgcatgtatttttcttgaca 30840302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 12513125 - 12513197
Alignment:
Q  375 ttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatattattcat 446  Q
    |||||| |||||||||||| || ||| ||||||||||  ||||||||||||| ||||||||| |||| |||||    
T  12513125 ttattgcatgggtaacactcgacttgttgcatgtattcctcttgacacttgaattgttgcatgtattcttcat 12513197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 203 - 424
Target Start/End: Complemental strand, 9846473 - 9846252
Alignment:
Q  203 gtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgt 302  Q
    |||| ||||||||| |||||| || | | || || |||| ||||||   |||||||||||||||||||| |||||| |||| |||||  |||||||| ||    
T  9846473 gttttggtgagttcatgaaaaagaaagagggttgggattaatgagggctgaagaaagagatatgttttagtgcatgtataatatttggcttgttgcacgt 9846374  T
Q  303 aatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatg 402  Q
    | |||||| || || |||||||||| |||||||||||||||||||||| | | |||||||  |||||||| |||||||  ||| ||||| ||| ||| ||    
T  9846373 agtcctctcgacacttggtttactgtgtggataacaattgggttgttgtatgtattcctcacgacatttgggttattgcgtggataacaattggttgttg 9846274  T
Q  403 catgtattattcttgacacttg 424  Q
    |||||||| ||||| |||||||    
T  9846273 catgtatttttcttaacacttg 9846252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 11007995 - 11007941
Alignment:
Q  235 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttg 289  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  11007995 tgagattcatgagaaaagaagaaagagatatattttattgcatgaataaaatttg 11007941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 423
Target Start/End: Complemental strand, 8037751 - 8037658
Alignment:
Q  330 tggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacactt 423  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||||  |||||  ||| |||||| ||| | | |||||||||| ||||||||||||    
T  8037751 tggataacagttgggttgttgcatgcattcctcatgagatttggtttatttcatgagtaacatttggtcgttgcatgtatttttcttgacactt 8037658  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 410
Target Start/End: Original strand, 25203670 - 25203811
Alignment:
Q  270 tattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacat 369  Q
    |||||||||||||||| ||| |||| |||||||| || |||||| || | ||||  ||| || ||||||||||| |||||||| || |||||| |||||     
T  25203670 tattgcatgaataacaattggtttgatgcatgtattcatcttgacacttagtttgttgcatgaataacaattggtttgttgcatgctttcctcttgacac 25203769  T
Q  370 ttgagttattgtatgggtaacacttga-ttgatgcatgtatt 410  Q
    |||  |||||| |||  |||||||||| ||||| ||||||||    
T  25203770 ttggtttattgcatgaataacacttgacttgattcatgtatt 25203811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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