View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11649_high_6 (Length: 321)

Name: NF11649_high_6
Description: NF11649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11649_high_6
NF11649_high_6
[»] chr3 (1 HSPs)
chr3 (16-311)||(32762288-32762583)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 32762583 - 32762288
Alignment:
Q  16 ttgtgaacaaaccagattgttctggactaaggagtttcgaaagtccaaaatcagatatcttagcttgaaattgatcatgcagaagaatattctctggttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32762583 ttgtgaacaaaccagattgttctggactaaggagtttcgaaagtccaaaatcagatatcttagcttgaaattgatcatgcagaagaatattctctggttt 32762484  T
Q  116 gatatcacagtgaattatcttttgctcacatccactgtgaagataagcgagtccgcgcgctgttccaagggccacatcacacctctcttgccattccaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32762483 gatatcacagtgaattatcttttgctcacatccactgtgaagataagcgagtccgcgcgctgttccaagggccacatcacacctctcttgccattccaaa 32762384  T
Q  216 accggatgtccaccgaagaggttccggtcgagtgagccgcggttcatgtactcgtacaccaacattcggtgtcccctttgagcacaaaagcctttg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32762383 accggatgtccaccgaagaggttccggtcgagtgagccgcggttcatgtactcgtacaccaacattcggtgtcccctttgagcacaaaagcctttg 32762288  T

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