View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11649_low_14 (Length: 239)
Name: NF11649_low_14
Description: NF11649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11649_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3746123 - 3745901
Alignment:
| Q |
1 |
aaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3746123 |
aaaaagaagaaacttatgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagattcttttggcatga |
3746024 |
T |
|
| Q |
101 |
catcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
3746023 |
catcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaacacaactacttcttttggtttagtcaacattattgacaac |
3745924 |
T |
|
| Q |
201 |
cctttaactttaggaccaaaaat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
3745923 |
cctttaactttaggaccaaaaat |
3745901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3751940 - 3751723
Alignment:
| Q |
1 |
aaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatga |
100 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
3751940 |
aaaaacaagaaacttttgattttgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatga |
3751841 |
T |
|
| Q |
101 |
catcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaac |
200 |
Q |
| |
|
||| ||||||| ||||| || ||| |||||||| |||| |||| ||||||||||||||| ||||| |||| |||||| | ||||||||| |||| || |
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| T |
3751840 |
tatcttgagtgggaaaaatcccactgcaattacaattgttccaccaccattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgac |
3751741 |
T |
|
| Q |
201 |
cctttaactttaggacca |
218 |
Q |
| |
|
||||| ||| |||||||| |
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|
| T |
3751740 |
cctttgactataggacca |
3751723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3781313 - 3781096
Alignment:
| Q |
1 |
aaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatga |
100 |
Q |
| |
|
||||| |||| |||| |||||||||||| | ||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
3781313 |
aaaaacaagacactttcgattttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatga |
3781214 |
T |
|
| Q |
101 |
catcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaac |
200 |
Q |
| |
|
| || ||||||||||||| || ||||| || || || | |||| | ||| || |||| |||| || ||||||| || || ||||| ||||||||| |
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| T |
3781213 |
cgtcttgagtggaaaaaatccaacttcggttgcaattattccaccatcatcaaaagtaaactcaaccaccgcttttggtttggttaacatgattgacaac |
3781114 |
T |
|
| Q |
201 |
cctttaactttaggacca |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3781113 |
cctttaactttaggacca |
3781096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 3755742 - 3755590
Alignment:
| Q |
66 |
gaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaa |
165 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || ||||||| |||| |||| |||| ||||| ||| |
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|
| T |
3755742 |
gaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccctacttcagttgcagttgtcccaccaccaatgaaactaaactcaa |
3755643 |
T |
|
| Q |
166 |
ctacttcttttgggttagtcaacattattgacaaccctttaactttaggacca |
218 |
Q |
| |
|
| ||| | ||||| | |||| ||| || |||||||||||||||||||||||| |
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|
| T |
3755642 |
ccactgcctttggttcagtccgcatgatcgacaaccctttaactttaggacca |
3755590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3777000 - 3776784
Alignment:
| Q |
1 |
aaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatga |
100 |
Q |
| |
|
|||||||||| || | ||||||||||||| ||||||| | || |||||| ||||||||| || ||||||||||||||||||| ||| | ||||||||| |
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|
| T |
3777000 |
aaaaagaagatacctttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatga |
3776901 |
T |
|
| Q |
101 |
catcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaac |
200 |
Q |
| |
|
||| | ||||||||||| || ||||| || || |||| |||| | ||| || |||| |||| |||| |||||| ||||| | ||| ||||||||| |
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|
| T |
3776900 |
catagttagtggaaaaaatccaacttcggttgcaattgttccaccatcatcaaaagtaaactcaaccactttttttggtttagttagcatgattgacaac |
3776801 |
T |
|
| Q |
201 |
cctttaactttaggacc |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
3776800 |
cctttaactttaggacc |
3776784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3762925 - 3762703
Alignment:
| Q |
1 |
aaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatga |
100 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||||||| || |||||| ||||||||| || ||||| ||||| ||||| ||||||| |||||||| |
|
|
| T |
3762925 |
aaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatga |
3762826 |
T |
|
| Q |
101 |
catcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaac------tacttcttttgggttagtcaacattatt |
194 |
Q |
| |
|
||| | |||||||| |||||||| |||||||| |||| | || ||||||||| ||| | |||| || | ||||||| |||||| ||| ||| |
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|
| T |
3762825 |
catactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgatt |
3762726 |
T |
|
| Q |
195 |
gacaaccctttaactttaggacc |
217 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
3762725 |
gacaaccctttgactttaggacc |
3762703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 3767313 - 3767203
Alignment:
| Q |
17 |
tgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaa |
116 |
Q |
| |
|
||||||||||||| ||||||| | || |||||| ||||||||| || ||||||||||||||||||| ||| | |||||||||||| ||||||||||| |
|
|
| T |
3767313 |
tgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaa |
3767214 |
T |
|
| Q |
117 |
aaccctacttc |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
3767213 |
aaccctacttc |
3767203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 3771500 - 3771348
Alignment:
| Q |
66 |
gaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaa |
165 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| || || |||||||||||||||| |||| | | | |||| |||| |||| |||| ||||| |||| |
|
|
| T |
3771500 |
gaaaaactaagtcatttcagattctactggcacgagatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaa |
3771401 |
T |
|
| Q |
166 |
ctacttcttttgggttagtcaacattattgacaaccctttaactttaggacca |
218 |
Q |
| |
|
| ||| ||||||| | |||| ||| || |||||||||||||||||||||||| |
|
|
| T |
3771400 |
ccactgcttttggttcagtccgcatgatcgacaaccctttaactttaggacca |
3771348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 25985266 - 25985416
Alignment:
| Q |
64 |
aagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatac |
163 |
Q |
| |
|
|||| |||||||| ||||| | ||||| |||||||||||| | |||||||| |||||| ||||||| || |||| |||| ||| ||||| ||| | |
|
|
| T |
25985266 |
aagagaagctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttgaa---aaactc |
25985362 |
T |
|
| Q |
164 |
aactacttcttttgggttagtcaacattattgacaaccctttaactttaggacc |
217 |
Q |
| |
|
||| ||| ||||||| ||||| ||||| ||||| ||||||||||| |||||||| |
|
|
| T |
25985363 |
aaccactgcttttggtttagttaacatgattgagaaccctttaaccttaggacc |
25985416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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