View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11649_low_2 (Length: 468)
Name: NF11649_low_2
Description: NF11649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11649_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 216 - 453
Target Start/End: Original strand, 2817483 - 2817717
Alignment:
| Q |
216 |
agagacagacttccccacatattcacccactcttccgataggaaaactctatcaattcggctcgtcgccacactatannnnnnnnnnnnaaattgtatac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2817483 |
agagacagacttccccacatattcacccactcttccgataggaaaactctatcaattcggctcgtcgccacactatatgtgtgtgtgtgaaattgtatac |
2817582 |
T |
|
| Q |
316 |
aaaaatgtagaatccatgaacatgaaattagtaaaagcaagaaagaaatgatgataataaaaaataacaatggagaaaaggcttgaaccgtaagaagaag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2817583 |
aaaaatgtagaatccatgaacatgaaattagtaaaagcaagaaagaaatgatgataataaaaaataacaatggagaaaaggcttgaaccgt---aagaag |
2817679 |
T |
|
| Q |
416 |
tagtgaagggatagagagacttgtgggatgattctgtg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817680 |
tagtgaagggatagagagacttgtgggatgattctgtg |
2817717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 2817323 - 2817451
Alignment:
| Q |
66 |
gatttaataaacatcaaacatcctccaccacctttttagatttccaattttcaattcaatccaatgattgttgaagcaaaaatgtttaggaccccaatcc |
165 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2817323 |
gatttaataaacatcaaacatcctacaccacctttttagatttccaattttcaattcaatccaatgattgttgaagcaaaaatgtttaggactccaatcc |
2817422 |
T |
|
| Q |
166 |
gcttcgccaacttttaggatcaaagggca |
194 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
2817423 |
gcttcgccaacctttaggatcaaagggca |
2817451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2816839 - 2816883
Alignment:
| Q |
19 |
atggttcatagtttttgaaatcaagagattcttacagggaacact |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816839 |
atggttcatagtttttgaaatcaagagattcttacagggaacact |
2816883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 1423475 - 1423428
Alignment:
| Q |
19 |
atggttcatagtttttgaaatcaagagattcttacagggaacacttgg |
66 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
1423475 |
atggttcatagtttttgaaatgatgagattcttacaggaaacacttgg |
1423428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 26477646 - 26477704
Alignment:
| Q |
216 |
agagacagacttccccacatattcacccactcttccgataggaaaactctatcaattcg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | | ||| || ||||||||||| |
|
|
| T |
26477646 |
agagacagacttccccacatattcacccactcgtccaaaatgaacaccctatcaattcg |
26477704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 24567646 - 24567600
Alignment:
| Q |
227 |
tccccacatattcacccactcttccgataggaaaactctatcaattc |
273 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||||||| |
|
|
| T |
24567646 |
tccccacaaattcacccactcttccgatacaacaactctatcaattc |
24567600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University