View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11649_low_3 (Length: 461)

Name: NF11649_low_3
Description: NF11649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11649_low_3
NF11649_low_3
[»] chr4 (5 HSPs)
chr4 (19-440)||(43108157-43108579)
chr4 (253-394)||(3342933-3343073)
chr4 (364-440)||(3343737-3343814)
chr4 (268-305)||(1607955-1607992)
chr4 (253-309)||(10982557-10982613)
[»] chr7 (4 HSPs)
chr7 (185-440)||(31861012-31861267)
chr7 (251-435)||(28950442-28950625)
chr7 (363-444)||(35153728-35153810)
chr7 (365-440)||(35153615-35153691)
[»] chr8 (1 HSPs)
chr8 (203-417)||(9321376-9321590)
[»] chr2 (5 HSPs)
chr2 (235-440)||(35711688-35711893)
chr2 (225-395)||(38179739-38179908)
chr2 (318-392)||(18483809-18483883)
chr2 (251-305)||(29939597-29939651)
chr2 (383-431)||(11879960-11880009)
[»] chr5 (3 HSPs)
chr5 (235-440)||(10927767-10927971)
chr5 (341-420)||(30840222-30840302)
chr5 (375-446)||(12513125-12513197)
[»] chr1 (1 HSPs)
chr1 (203-424)||(9846252-9846473)
[»] chr6 (2 HSPs)
chr6 (235-289)||(11007941-11007995)
chr6 (330-423)||(8037658-8037751)
[»] chr3 (1 HSPs)
chr3 (270-410)||(25203670-25203811)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 43108579 - 43108157
Alignment:
Q  19 ggaccaaaagagcatttaa-ccaaattgatttataaatcatataaatctttgtttgatctacacatattaggtcaaaaggggagggcaaagaggatccat 117  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43108579 ggaccaaaagagcatttaagcctaattgatttataaatcatataaatctttgtttgatctacacatattaggtcaaaaggggagggcaaagaggatccat 43108480  T
Q  118 aagaaaaagatagaaggttgtgattgaagaggtaagaagatagacaccctttttagaagnnnnnnn-gagatgatagagagcgaatgtttaggtgagttc 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||||| ||||||||||||||||| |||||||||    
T  43108479 aagaaaaagatagaaggttgtaattgaagaggtaagaagatagacacccttttcagaagaaaaaaaagagatcatagagagcgaatgttttggtgagttc 43108380  T
Q  217 gtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatac 316  Q
    |||||||||| ||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43108379 gtgaaaaggaaatagggatgagaatcatgagggaagaagaaagagatatgttt-attgcatgaataacatttgctttgttgcatgtaatcctcttgatac 43108281  T
Q  317 ctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattctt 416  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43108280 ctggtttactgcgtggataacaattgggttgttgcatgcattcctcgtgacatttgggttattgtatgggtaacacttgattgatgcatgtattattctt 43108181  T
Q  417 gacacttgacttgttgcatatatt 440  Q
    ||||||||||||||||||| ||||    
T  43108180 gacacttgacttgttgcatgtatt 43108157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 253 - 394
Target Start/End: Original strand, 3342933 - 3343073
Alignment:
Q  253 aagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgca 352  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||| || |  ||||||||||| ||||||||||||| | |||||||    
T  3342933 aagaaagagatatgttttattgcatgaataacatgtggttttttgcatgtaattctctagaca-ttggtttactgcatggataacaattgcggtgttgca 3343031  T
Q  353 ggcattcctcgtgacatttgagttattgtatgggtaacactt 394  Q
     | |||  || ||||| |||  || ||| |||||||||||||    
T  3343032 tgtatttttcttgacaattgttttgttgcatgggtaacactt 3343073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 3343737 - 3343814
Alignment:
Q  364 tgacatttgagttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatatt 440  Q
    |||||||||  |||||| ||||||||||||||| ||| ||||||||||  ||||||||||||  ||||||||| ||||    
T  3343737 tgacatttggtttattgcatgggtaacacttgacttgctgcatgtattcatcttgacacttggtttgttgcatgtatt 3343814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 1607955 - 1607992
Alignment:
Q  268 tttattgcatgaataacatttgctttgttgcatgtaat 305  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  1607955 tttattgcataaataacatttgatttgttgcatgtaat 1607992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 10982613 - 10982557
Alignment:
Q  253 aagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctc 309  Q
    |||||||| |||| |||||  |||||||||| |||||  ||||||||||||||||||    
T  10982613 aagaaagaaatatattttaaagcatgaataatatttggcttgttgcatgtaatcctc 10982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 185 - 440
Target Start/End: Complemental strand, 31861267 - 31861012
Alignment:
Q  185 agatgatagagagcgaatgtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataac 284  Q
    ||||||||||||| |   |||| ||||||||| ||| || ||||   || ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  31861267 agatgatagagagtgggggttttggtgagttcatgagaaagagagggggttgagatttatgagggaagaagaaagagatatgttttattgcatgaataac 31861168  T
Q  285 atttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatg 384  Q
    ||||| ||||||||||||||||||||||| || || |||||| | || ||||||||| ||||||||||  |||||||| ||| ||||| |||||||||||    
T  31861167 atttggtttgttgcatgtaatcctcttgacacttgatttactacatgaataacaattaggttgttgcatacattcctcatgatatttgggttattgtatg 31861068  T
Q  385 ggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcatatatt 440  Q
    | ||||||||| ||  |||| ||||| |||| |||||||| |||||||||| ||||    
T  31861067 gataacacttggtttctgcacgtattcttctcgacacttggcttgttgcatgtatt 31861012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 435
Target Start/End: Original strand, 28950442 - 28950625
Alignment:
Q  251 agaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttg 350  Q
    |||||||||||||||||||||||| |||||||||| |||  || |||||||||||| |  ||| || |  |||||||| |||||||||||||  ||||||    
T  28950442 agaagaaagagatatgttttattgtatgaataacacttgacttcttgcatgtaatcttaatgacacttt-tttactgcatggataacaattgaattgttg 28950540  T
Q  351 caggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgcat 435  Q
    || |||||| || ||||||||||||||||| ||| |||||||||| ||| |||||||| |  ||||||||||||| |||||||||    
T  28950541 catgcattcgtcatgacatttgagttattgcatgagtaacacttggttgttgcatgtactcctcttgacacttgatttgttgcat 28950625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 35153810 - 35153728
Alignment:
Q  363 gtgacatttgagttattgtatgggtaacacttg-attgatgcatgtattattcttgacacttgacttgttgcatatattattc 444  Q
    |||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  35153810 gtgacagttgatttattgtatgggtaacacttggatcgatgcatgtattattcttgacacttgacttgttacacgtattattc 35153728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 440
Target Start/End: Complemental strand, 35153691 - 35153615
Alignment:
Q  365 gacatttgagttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatatt 440  Q
    |||| |||| |||||| | ||||||||||||| ||| ||||| ||||  ||||||||||||||| ||||||| ||||    
T  35153691 gacacttgatttattgcacgggtaacacttgacttgctgcatatatttctcttgacacttgactggttgcatgtatt 35153615  T

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Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 203 - 417
Target Start/End: Original strand, 9321376 - 9321590
Alignment:
Q  203 gtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgt 302  Q
    |||| ||||||||||||| || |||||  || || ||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||| || |    
T  9321376 gttttggtgagttcgtgagaaagagatgaggttgggattcatgaaggaggaagaaagagatatgttttattgcatgaataacatttgccttgttgaatat 9321475  T
Q  303 aatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatg 402  Q
    ||||||||||| |  | ||||  ||| |||||||||||| |||||||||| |||||||| | |||||||||||||||| |||||||||||||| ||| ||    
T  9321476 aatcctcttgacatttagtttgttgcatggataacaattaggttgttgcaagcattccttgagacatttgagttattgcatgggtaacacttggttgttg 9321575  T
Q  403 catgtattattcttg 417  Q
    |||||||| ||||||    
T  9321576 catgtattcttcttg 9321590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 235 - 440
Target Start/End: Complemental strand, 35711893 - 35711688
Alignment:
Q  235 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggat 334  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||  |||||| ||||| ||||||||| |  ||||| ||||  |||||    
T  35711893 tgagattcatgagggaagaagaaaaatatatgttttattgcatgaataacatttggcttgttgtatgtattcctcttgacatttggttaactggatggat 35711794  T
Q  335 aacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgca 434  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||| | ||| |||| |||||  ||||||||||||  ||||||||    
T  35711793 aacaattggcttgttgcatgcattcctcgtgacatttgggttattgcatgggtaacactaggttgttgcaagtattgatcttgacacttggtttgttgca 35711694  T
Q  435 tatatt 440  Q
    | ||||    
T  35711693 tgtatt 35711688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 38179908 - 38179739
Alignment:
Q  225 gagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggttta 324  Q
    |||| |||| || ||||||||||  || ||||||||||||||||||||||||||  |||||||||  ||||||||||||||| ||| ||||| ||||||     
T  38179908 gagagatggttgggattcatgagtgaaaaagaaagagatatgttttattgcatgtgtaacatttgacttgttgcatgtaatcttctcgatacttggttt- 38179810  T
Q  325 ctgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttg 395  Q
    |||| ||||||| ||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||||||    
T  38179809 ctgcatggataaaaattgggttgttgcatgcattcctcatgacgtttgagttattgaatgagtaacacttg 38179739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 18483809 - 18483883
Alignment:
Q  318 tggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacac 392  Q
    ||||||||||| ||||| | |||||||||| |||| |||||| |  ||||||||| ||||||| |||||||||||    
T  18483809 tggtttactgcatggatgataattgggttgctgcatgcattctttatgacatttgggttattgaatgggtaacac 18483883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 29939597 - 29939651
Alignment:
Q  251 agaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaat 305  Q
    |||||||||||||||  ||||||| ||||||||||||||| || |||||||||||    
T  29939597 agaagaaagagatatagtttattgaatgaataacatttgccttattgcatgtaat 29939651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 11879960 - 11880009
Alignment:
Q  383 tgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgtt 431  Q
    |||||||||||||  ||||||||||||||  |||||||||||||||||||    
T  11879960 tgggtaacacttggcttgatgcatgtattcctcttgacacttgacttgtt 11880009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 440
Target Start/End: Original strand, 10927767 - 10927971
Alignment:
Q  235 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggat 334  Q
    |||||||||| | | || |||||||||| |||||||| || |||||||| |||||  ||||||  ||||||||| |||| || |  |||| ||| |||||    
T  10927767 tgagattcatcaaggaaaaagaaagagacatgttttactgtatgaataatatttggcttgttgtctgtaatcctattgacactta-tttaatgcatggat 10927865  T
Q  335 aacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacacttgacttgttgca 434  Q
    |||||||| ||||||||| ||||| ||| | ||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||| ||||||||    
T  10927866 aacaattgagttgttgcatgcatttctcataacatttgagttattgcatgggtaacacttggtcgatgcatgtattcttcttgacacttgatttgttgca 10927965  T
Q  435 tatatt 440  Q
    ||||||    
T  10927966 tatatt 10927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 30840222 - 30840302
Alignment:
Q  341 tgggttgttgcaggcatt-cctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgaca 420  Q
    |||||||||||| ||||| |||||||||||||| ||||| | |||||||||||||| ||| |||||||||| |||||||||    
T  30840222 tgggttgttgcatgcatttcctcgtgacatttgggttatggcatgggtaacacttggttgttgcatgtatttttcttgaca 30840302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 12513125 - 12513197
Alignment:
Q  375 ttattgtatgggtaacacttga-ttgatgcatgtattattcttgacacttgacttgttgcatatattattcat 446  Q
    |||||| |||||||||||| || ||| ||||||||||  ||||||||||||| ||||||||| |||| |||||    
T  12513125 ttattgcatgggtaacactcgacttgttgcatgtattcctcttgacacttgaattgttgcatgtattcttcat 12513197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 203 - 424
Target Start/End: Complemental strand, 9846473 - 9846252
Alignment:
Q  203 gtttaggtgagttcgtgaaaaggagatatggatgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttgctttgttgcatgt 302  Q
    |||| ||||||||| |||||| || | | || || |||| ||||||   |||||||||||||||||||| |||||| |||| |||||  |||||||| ||    
T  9846473 gttttggtgagttcatgaaaaagaaagagggttgggattaatgagggctgaagaaagagatatgttttagtgcatgtataatatttggcttgttgcacgt 9846374  T
Q  303 aatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatg 402  Q
    | |||||| || || |||||||||| |||||||||||||||||||||| | | |||||||  |||||||| |||||||  ||| ||||| ||| ||| ||    
T  9846373 agtcctctcgacacttggtttactgtgtggataacaattgggttgttgtatgtattcctcacgacatttgggttattgcgtggataacaattggttgttg 9846274  T
Q  403 catgtattattcttgacacttg 424  Q
    |||||||| ||||| |||||||    
T  9846273 catgtatttttcttaacacttg 9846252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 11007995 - 11007941
Alignment:
Q  235 tgagattcatgaggaaagaagaaagagatatgttttattgcatgaataacatttg 289  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  11007995 tgagattcatgagaaaagaagaaagagatatattttattgcatgaataaaatttg 11007941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 423
Target Start/End: Complemental strand, 8037751 - 8037658
Alignment:
Q  330 tggataacaattgggttgttgcaggcattcctcgtgacatttgagttattgtatgggtaacacttgattgatgcatgtattattcttgacactt 423  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||||  |||||  ||| |||||| ||| | | |||||||||| ||||||||||||    
T  8037751 tggataacagttgggttgttgcatgcattcctcatgagatttggtttatttcatgagtaacatttggtcgttgcatgtatttttcttgacactt 8037658  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 410
Target Start/End: Original strand, 25203670 - 25203811
Alignment:
Q  270 tattgcatgaataacatttgctttgttgcatgtaatcctcttgatacctggtttactgcgtggataacaattgggttgttgcaggcattcctcgtgacat 369  Q
    |||||||||||||||| ||| |||| |||||||| || |||||| || | ||||  ||| || ||||||||||| |||||||| || |||||| |||||     
T  25203670 tattgcatgaataacaattggtttgatgcatgtattcatcttgacacttagtttgttgcatgaataacaattggtttgttgcatgctttcctcttgacac 25203769  T
Q  370 ttgagttattgtatgggtaacacttga-ttgatgcatgtatt 410  Q
    |||  |||||| |||  |||||||||| ||||| ||||||||    
T  25203770 ttggtttattgcatgaataacacttgacttgattcatgtatt 25203811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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