View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11649_low_8 (Length: 288)
Name: NF11649_low_8
Description: NF11649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11649_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 38995996 - 38996264
Alignment:
| Q |
1 |
ataaaataaaataaaaacatccttaaaacataactctctaagaacaaatcgatgaagatgatgggtttagggaaaatcatggatgaaaagtgggagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38995996 |
ataaaataaaataaaaacatccttaaaacataactctctaagaacaaatcgatgaagatgatgggtttagggaaaatcatggatgaaaagtgggagaaga |
38996095 |
T |
|
| Q |
101 |
aaaaattatcaggaaagataatggagatagaaaatatgagagaggtcaaaaaatggggagnnnnnnnnnntcagagagaattagatgagagagtggaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38996096 |
aaaaattatcaggaaagataatggagatagaaaatatgagagaggtcaaaaaatggggagaaaaaaaaaatcagagagaattagatgagagagtggaaga |
38996195 |
T |
|
| Q |
201 |
gatgggagacggaactgaattgcctcaagtaaatgcaggtcatgaatttgctttggaaatagcggaaag |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38996196 |
gatgggagacggaactgaattgcctcaagtaaatgcaggtcatgaatttgctttggaaatagcggaaag |
38996264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University