View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1164_high_1 (Length: 551)
Name: NF1164_high_1
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Complemental strand, 30634586 - 30634129
Alignment:
| Q |
11 |
ttctgcagggataagaaacgattactcaactgatggtgccgctttaagttcttgccaaacctagaatgaagatgcccacacaggtaggctgatatggaat |
110 |
Q |
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| T |
30634586 |
ttctgcagggataagaaacgattactcaactgatggtgccgctttaagttcttgccaaacctagaatgaagatgcccgcacaggtaggctgatatggaat |
30634487 |
T |
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| Q |
111 |
gctttaggaaaacttcttttaaggttcttccagaactagagggtgcagaaaatgagagtggaaagtgcccaaaggatattttggtgactggtttttccga |
210 |
Q |
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| T |
30634486 |
gctttaggaaaacttcttttaaggttcttccagaactagagggtgcagaaaatgagagtggaaagtgcccaaaggatattttggtgactggtttttctga |
30634387 |
T |
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| Q |
211 |
ctgagaatcccagtgtgagagttccaagtccaaatcctttagtaattgatctgtgggatgcccgaaaacattagttggacctcgtaagccagctccagct |
310 |
Q |
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| T |
30634386 |
ctgagaatcccagtgtgagagttccaagtccaaatcctttagtaattgatctgtgggatgcccgaaaacattagttggacctcgtaagccagctccagct |
30634287 |
T |
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| Q |
311 |
gacattgtggtatcaatcccaacaaagagatgtttccgctccttagtctgtgtgataaaatgccagtatgtgcaaatgagaaaggagctaacatcaagca |
410 |
Q |
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| T |
30634286 |
gacattgtggtatcaatcccaacaaagagatgtttccgctccttagtctgtgtgataaaatgccagtatgtgcaaatgagaaaggagctaacatcaagca |
30634187 |
T |
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| Q |
411 |
aataataatgccgaaattcaagcctactgttactgagttcaatttgtccagacatata |
468 |
Q |
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| T |
30634186 |
aataataatgccgaaattcaagcctactgttactgagttcaatttgtccggacatata |
30634129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 30634005 - 30633946
Alignment:
| Q |
492 |
tgagaaataatattgcaagggttccaaatattatttgcttttaccaaatacacctaaaga |
551 |
Q |
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| T |
30634005 |
tgagaaataatattgcaagggttccaaatattatttgcttttaccaaatacacctaaaga |
30633946 |
T |
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