View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1164_high_17 (Length: 252)

Name: NF1164_high_17
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1164_high_17
NF1164_high_17
[»] chr4 (6 HSPs)
chr4 (1-240)||(55908343-55908582)
chr4 (4-72)||(1600814-1600882)
chr4 (1-201)||(547197-547397)
chr4 (3-115)||(3438269-3438381)
chr4 (1-43)||(12118925-12118967)
chr4 (1-37)||(53761403-53761439)
[»] chr2 (2 HSPs)
chr2 (1-240)||(1037279-1037518)
chr2 (137-212)||(32785526-32785601)
[»] scaffold0295 (1 HSPs)
scaffold0295 (119-240)||(354-475)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-126)||(276-401)
[»] chr6 (5 HSPs)
chr6 (6-122)||(7993805-7993921)
chr6 (1-121)||(6596564-6596684)
chr6 (1-37)||(6432596-6432632)
chr6 (1-37)||(8913687-8913723)
chr6 (1-43)||(6602823-6602865)
[»] chr1 (5 HSPs)
chr1 (1-115)||(19468123-19468237)
chr1 (1-122)||(29658571-29658692)
chr1 (1-122)||(29691086-29691207)
chr1 (1-122)||(29718598-29718719)
chr1 (1-115)||(33160874-33160988)
[»] chr8 (2 HSPs)
chr8 (5-212)||(17627678-17627885)
chr8 (126-201)||(17636137-17636212)
[»] chr7 (2 HSPs)
chr7 (1-115)||(10169754-10169868)
chr7 (1-115)||(10177279-10177393)
[»] chr5 (1 HSPs)
chr5 (89-172)||(32267785-32267868)
[»] chr3 (1 HSPs)
chr3 (5-33)||(33396948-33396976)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 55908343 - 55908582
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55908343 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttatt 55908442  T
Q  101 gacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55908443 gaggtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaatttttcgatggattgtgttttaaaccatcaattaaagtcactccatt 55908542  T
Q  201 tagcttgcaattttcagttactaaatgaaaacatcatatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55908543 tagcttgcaattttcagttactaaatgaaaacatcatatt 55908582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 1600882 - 1600814
Alignment:
Q  4 gtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgc 72  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||    
T  1600882 gtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgc 1600814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 547397 - 547197
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    |||||||||||||||||||| || ||||||||||||| | ||| |    |||||| | |  ||| ||||||| |||||||| |||||| ||||||||| |    
T  547397 tttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagt 547298  T
Q  101 gacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatt 200  Q
    ||  |||||||||||| |||||   | |||    |||||||||| |||||||||||||  | ||||| |||| ||| || |||||| ||||| |||||||    
T  547297 gagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatt 547198  T
Q  201 t 201  Q
    |    
T  547197 t 547197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 3438269 - 3438381
Alignment:
Q  3 tgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattga 102  Q
    |||||| |||||||||||||||||||||||||||||| |||   ||||||||| | |  ||| | ||| | ||| |||| |||||||||||||||| |||    
T  3438269 tgtttcatggtgatttggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactcattagtaattgtccttcacttagtga 3438368  T
Q  103 cgtcaaaatggaa 115  Q
      | |||||||||    
T  3438369 gataaaaatggaa 3438381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12118925 - 12118967
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgt 43  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||    
T  12118925 tttgtttcttggtgatttgttgtctataaacattagtaaatgt 12118967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 53761403 - 53761439
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagt 37  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  53761403 tttgcttcttggtgatttggtgtccataaaccttagt 53761439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1037279 - 1037518
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1037279 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttatt 1037378  T
Q  101 gacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037379 gaggtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatt 1037478  T
Q  201 tagcttgcaattttcagttactaaatgaaaacatcatatt 240  Q
    || |||||||||||||||||||||||||||||||||||||    
T  1037479 taacttgcaattttcagttactaaatgaaaacatcatatt 1037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 32785526 - 32785601
Alignment:
Q  137 agtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaatt 212  Q
    |||||| | ||||||||||||| |||||||| |||| ||| || |||||||||||  |||||||| ||| ||||||    
T  32785526 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaatt 32785601  T

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Target: scaffold0295 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 354 - 475
Alignment:
Q  119 acaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagt 218  Q
    ||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  354 acaagtttggggggaaagtgcgtagataattctaattcttcaatggattgtgttttaaaccatcaattaaagtcacttcatttagcttgcaattttcagt 453  T
Q  219 tactaaatgaaaacatcatatt 240  Q
    ||||||||||||||||||||||    
T  454 tactaaatgaaaacatcatatt 475  T

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Target: scaffold0262 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 401 - 276
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||||| ||||||||||||| |||||||||||||    
T  401 tttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactcgttaggaattatccttcacttatt 302  T
Q  101 gacgtcaaaatggaacacacaagttt 126  Q
    ||  ||||||||||||||||||||||    
T  301 gagatcaaaatggaacacacaagttt 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 7993805 - 7993921
Alignment:
Q  6 ttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgt 105  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||| | |||||||| || ||||| ||||||  |||  |    
T  7993805 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 7993904  T
Q  106 caaaatggaacacacaa 122  Q
    ||||||||||| |||||    
T  7993905 caaaatggaacgcacaa 7993921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6596564 - 6596684
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    ||||||||||||||||||||| ||||||||||||| | | |||   | ||||||||| || ||| ||||| ||||||| || ||||||||||| |||| |    
T  6596564 tttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttttccctcgtaagaaattgtccttcgcttagt 6596663  T
Q  101 gacgtcaaaatggaacacaca 121  Q
    ||  |||||||| || |||||    
T  6596664 gagatcaaaatgcaaaacaca 6596684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6432632 - 6432596
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagt 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6432632 tttgtttcttgctgatttggtgtctataaaccttagt 6432596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8913687 - 8913723
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagt 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8913687 tttgtttcttggtaatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6602823 - 6602865
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgt 43  Q
    ||||||||||  | |||||||||||||||||||||||||||||    
T  6602823 tttgtttcttactaatttggtgtctataaaccttagtgaatgt 6602865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 19468123 - 19468237
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||     |||||| | ||  || ||||| | ||||||||||||||||||||||||| |    
T  19468123 tttgtttcttggtgatttagtgtctataaaccttagtgaatgtatggacctcacatattcaaccttgtttacactcgttaggaattgtccttcacttagt 19468222  T
Q  101 gacgtcaaaatggaa 115  Q
    ||  |||||||||||    
T  19468223 gagatcaaaatggaa 19468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 29658571 - 29658692
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    ||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||  ||||| | |||||||  |||||||||||||||| |    
T  29658571 tttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagt 29658670  T
Q  101 gacgtcaaaatggaacacacaa 122  Q
    ||| ||||||||||| ||||||    
T  29658671 gacatcaaaatggaatacacaa 29658692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 29691086 - 29691207
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    ||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||  ||||| | |||||||  |||||||||||||||| |    
T  29691086 tttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagt 29691185  T
Q  101 gacgtcaaaatggaacacacaa 122  Q
    ||| ||||||||||| ||||||    
T  29691186 gacatcaaaatggaatacacaa 29691207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 29718598 - 29718719
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    ||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||  ||||| | |||||||  |||||||||||||||| |    
T  29718598 tttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagt 29718697  T
Q  101 gacgtcaaaatggaacacacaa 122  Q
    ||| ||||||||||| ||||||    
T  29718698 gacatcaaaatggaatacacaa 29718719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 33160988 - 33160874
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    ||||||||||| || |||||||||||||||||||| || |||| | | ||||||||| || ||  ||||| | || ||||  || ||||||||||||| |    
T  33160988 tttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcattgttttcacttgttacaaactgtccttcacttagt 33160889  T
Q  101 gacgtcaaaatggaa 115  Q
    ||| |||||||||||    
T  33160888 gacatcaaaatggaa 33160874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 17627678 - 17627885
Alignment:
Q  5 tttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacg 104  Q
    ||||||||| ||||||||||| ||||||||||| | ||| | ||||||   || || ||| ||||| | |||||||| || ||||||||||||| |||      
T  17627678 tttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtccttcacttaatgaga 17627777  T
Q  105 tcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagc 204  Q
    | |||||||||  ||||  | | |||||| ||||| || | ||||||||||||| | ||||||  ||| ||| || ||||||||| || ||| |||| ||    
T  17627778 taaaaatggaatgcacatctattggggaagagagtctaaagaattctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggc 17627877  T
Q  205 ttgcaatt 212  Q
    || |||||    
T  17627878 tttcaatt 17627885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 17636137 - 17636212
Alignment:
Q  126 tgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccattt 201  Q
    |||||||||| | |||||| |||||||||||||||||| ||| |||| |||||| |||||| ||||| ||||||||    
T  17636137 tgggggaaaataatgtagagaattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccattt 17636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 10169754 - 10169868
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    ||||||| |||||||||| |||||| ||||||||||| |||||     | ||||| | ||  || ||||||| ||||||||||||||||||||||||| |    
T  10169754 tttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagt 10169853  T
Q  101 gacgtcaaaatggaa 115  Q
    ||  |||||||||||    
T  10169854 gagatcaaaatggaa 10169868  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 10177279 - 10177393
Alignment:
Q  1 tttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttatt 100  Q
    ||||||| |||||||||| |||||| ||||||||||| |||||     | ||||| | ||  || ||||||| ||||||||||||||||||||||||| |    
T  10177279 tttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagt 10177378  T
Q  101 gacgtcaaaatggaa 115  Q
    ||  |||||||||||    
T  10177379 gagatcaaaatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 32267868 - 32267785
Alignment:
Q  89 ccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgtt 172  Q
    |||||||||| |||  ||||||||||||||||| || | ||| |||||||| |||| | |||||| |||| |||||||| ||||    
T  32267868 ccttcacttagtgagatcaaaatggaacacacatgtattgggaaaaagagtctagagagttctaaatctttgatggattttgtt 32267785  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 33396976 - 33396948
Alignment:
Q  5 tttcttggtgatttggtgtctataaacct 33  Q
    |||||||||||||||||||||||||||||    
T  33396976 tttcttggtgatttggtgtctataaacct 33396948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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