View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1164_high_5 (Length: 450)
Name: NF1164_high_5
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 44397 - 44217
Alignment:
| Q |
15 |
tatctttgtgtattttcatttaggtaggaacaactatgaagaacatttctcaaacagtctacaagcaatctctattacaactagtaaattaatacgaaaa |
114 |
Q |
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| T |
44397 |
tatctttgtgtattttcatttaggtaggaacaactatgaagaacatttctcaaacagtttacaagaaatctctattacaactagtaaattaatacgaaaa |
44298 |
T |
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| Q |
115 |
aagtgtattatatgtcatctatgttaatatctatctaaacaactattacagcgtttcaaagcccaataactcaatactatt |
195 |
Q |
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| T |
44297 |
aagtgtattatatgtcatctatgttaatatctatctaaacaactattacagcgtttcaaagcccaataactcaatactatt |
44217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 259 - 349
Target Start/End: Complemental strand, 44153 - 44063
Alignment:
| Q |
259 |
gttaatttattggaatgcaaaatattatctgttttctaacaacctgtgtgagaagttgaagctttgatcttgtaacaacaaaattctttcc |
349 |
Q |
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| T |
44153 |
gttaatttattggaatgcaaaatattatctgttttctaacaacctgtgtgagaagttgaagctttgatcttgtaacaacaaaattctttcc |
44063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 62987 - 62910
Alignment:
| Q |
271 |
gaatgcaaaatattatctgttttctaacaacctgtgtgagaagttgaagctttgatcttgtaacaacaaaattctttc |
348 |
Q |
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| T |
62987 |
gaatgcaaaattttgtcggttttctaccaacctgtgtgggaagttaaatttttgatcttgtgacaacacaattctttc |
62910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 1297779 - 1297830
Alignment:
| Q |
286 |
tctgttttctaacaacctgtgtgagaagttgaagctttgatcttgtaacaac |
337 |
Q |
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| T |
1297779 |
tctgttttctaccaacctgtgtgggaagttgaatctttgatcttgtgacaac |
1297830 |
T |
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