View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1164_high_6 (Length: 449)
Name: NF1164_high_6
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_high_6 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 8290482 - 8290592
Alignment:
| Q |
14 |
atattggatagtggtcccttattgtttgtttattaactttggttgaaaacttaggagacttttgtttggacctaagtgtggctttgtttctttccatgta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8290482 |
atattggatagtggtcccttattgtttgtttattaactttgattgaaaacttaggagacttttgtttggacctaagtgtggctttgattctttccatgta |
8290581 |
T |
|
| Q |
114 |
ctatggtatcg |
124 |
Q |
| |
|
||||||||||| |
|
|
| T |
8290582 |
ctatggtatcg |
8290592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 370
Target Start/End: Original strand, 8290661 - 8290844
Alignment:
| Q |
189 |
tttgctaacttagatcaacaaaaaaatatgatggttccttnnnnnnnnnntaaaa-catgaaggtccaagttagcgtatatggacaaaagtatccaccta |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
8290661 |
tttgctaacttagatcaacaaaaaaatatgaaggttccttgaagaaaaaaaaaaaacatgaaggttcaagttagcgcatatggacaaaagtatccaccta |
8290760 |
T |
|
| Q |
288 |
ctactattataaatcattattaaatgaagggtaattatgtaatttaaaaaattgttaactg-ttttttgtctaaactgttttgt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||| |||| |
|
|
| T |
8290761 |
ctactattataaatcattattaaatgaagggtaattatgtaatttaaaaaaattgtaactgattttttgtcaaaactgtcttgt |
8290844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 75288 - 75230
Alignment:
| Q |
269 |
ggacaaaagtatccacctactactattataaatcattattaaatgaagggtaattatgt |
327 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
75288 |
ggacaaaaatatccacctataactattataaaccattattaaatgaatggtaattatgt |
75230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 30712037 - 30711968
Alignment:
| Q |
268 |
tggacaaaagtatccacctactactattataaatcattattaaatgaagggtaattatgtaatttaaaaa |
337 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
30712037 |
tggacaaaaatatccatgcactactatgataaactattattaaacgaagggtaattatttaatttaaaaa |
30711968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 25253046 - 25252982
Alignment:
| Q |
268 |
tggacaaaagtatccacctactactattataaatcattattaaatgaagggtaattatgtaattt |
332 |
Q |
| |
|
||||||||| |||| || |||| |||||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
25253046 |
tggacaaaaatatctacttactgctattataaaccattattaaacaaagggtaattatctaattt |
25252982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 38649909 - 38649945
Alignment:
| Q |
292 |
tattataaatcattattaaatgaagggtaattatgta |
328 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38649909 |
tattataaatcattattaaatgaaggataattatgta |
38649945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 13913611 - 13913681
Alignment:
| Q |
268 |
tggacaaaagtatccacctactactattataaatcattattaaatgaagggtaattatgtaatttaaaaaa |
338 |
Q |
| |
|
||||||| | ||| ||| || |||||||||||| |||||||||| |||| |||||||||| | |||||||| |
|
|
| T |
13913611 |
tggacaagaatattcacatattactattataaaccattattaaacgaagagtaattatgtgaattaaaaaa |
13913681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University