View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1164_high_8 (Length: 432)

Name: NF1164_high_8
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1164_high_8
NF1164_high_8
[»] chr3 (12 HSPs)
chr3 (331-422)||(9016893-9016984)
chr3 (12-160)||(9016571-9016719)
chr3 (336-420)||(54394591-54394675)
chr3 (332-419)||(16024807-16024894)
chr3 (331-415)||(1741971-1742055)
chr3 (331-420)||(31989801-31989890)
chr3 (331-421)||(16024518-16024608)
chr3 (331-420)||(25693294-25693383)
chr3 (196-228)||(9016755-9016787)
chr3 (364-419)||(35105076-35105131)
chr3 (371-421)||(50620600-50620650)
chr3 (331-404)||(31990147-31990220)
[»] chr4 (12 HSPs)
chr4 (331-418)||(17947288-17947375)
chr4 (331-418)||(31792623-31792710)
chr4 (337-415)||(40154646-40154723)
chr4 (331-417)||(51203221-51203307)
chr4 (339-416)||(36620916-36620993)
chr4 (339-415)||(15186857-15186933)
chr4 (342-417)||(2478935-2479010)
chr4 (334-419)||(41823537-41823622)
chr4 (352-416)||(5521526-5521590)
chr4 (331-415)||(11692153-11692237)
chr4 (364-416)||(19306075-19306127)
chr4 (363-419)||(22008398-22008454)
[»] chr8 (11 HSPs)
chr8 (331-418)||(158703-158790)
chr8 (331-417)||(15249584-15249670)
chr8 (331-395)||(14046482-14046545)
chr8 (331-419)||(23757285-23757373)
chr8 (336-421)||(33757869-33757954)
chr8 (334-417)||(22210238-22210321)
chr8 (386-421)||(33758173-33758208)
chr8 (364-418)||(6785834-6785888)
chr8 (364-421)||(23767196-23767254)
chr8 (331-391)||(22209985-22210045)
chr8 (377-421)||(37938884-37938927)
[»] chr5 (8 HSPs)
chr5 (331-415)||(7630619-7630703)
chr5 (331-421)||(40972121-40972211)
chr5 (331-420)||(21034620-21034709)
chr5 (331-419)||(41863732-41863820)
chr5 (331-416)||(26032249-26032334)
chr5 (335-395)||(40971862-40971922)
chr5 (367-421)||(9509101-9509155)
chr5 (336-412)||(30856376-30856452)
[»] chr7 (9 HSPs)
chr7 (331-420)||(33005134-33005224)
chr7 (331-415)||(18503569-18503653)
chr7 (343-406)||(2147102-2147165)
chr7 (331-416)||(14584929-14585014)
chr7 (331-416)||(15998799-15998884)
chr7 (332-417)||(25245012-25245097)
chr7 (334-415)||(33998854-33998934)
chr7 (364-416)||(12422599-12422651)
chr7 (382-418)||(36391384-36391420)
[»] chr2 (12 HSPs)
chr2 (331-420)||(35665587-35665676)
chr2 (331-418)||(12926506-12926593)
chr2 (331-416)||(25954750-25954835)
chr2 (331-419)||(35665325-35665413)
chr2 (365-419)||(10373888-10373942)
chr2 (339-419)||(24895742-24895822)
chr2 (350-418)||(27002994-27003062)
chr2 (331-419)||(28191735-28191822)
chr2 (337-391)||(578237-578291)
chr2 (331-419)||(7876443-7876529)
chr2 (334-409)||(30956056-30956132)
chr2 (331-419)||(35652090-35652177)
[»] chr6 (2 HSPs)
chr6 (331-415)||(4096769-4096853)
chr6 (336-413)||(1112024-1112101)
[»] chr1 (11 HSPs)
chr1 (336-418)||(33261690-33261771)
chr1 (336-418)||(33281849-33281930)
chr1 (334-415)||(14398280-14398361)
chr1 (331-419)||(1691295-1691383)
chr1 (350-421)||(362670-362741)
chr1 (331-420)||(27085951-27086042)
chr1 (364-421)||(35789487-35789544)
chr1 (382-419)||(51489592-51489629)
chr1 (331-419)||(14397988-14398076)
chr1 (331-419)||(27086250-27086338)
chr1 (371-415)||(41064612-41064656)
[»] scaffold0939 (1 HSPs)
scaffold0939 (331-420)||(708-797)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 9016893 - 9016984
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctttg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9016893 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaagtttatttaaccctttg 9016984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 9016571 - 9016719
Alignment:
Q  12 gttaggataattcttctcaatgtacaagcctggtgtgggaaggtacgttaaagtcaaccacaaattctaagaaacacatactgagtgtgactagtaaagc 111  Q
    ||||||||||||||||||| | |||||| ||| | || |||| || |||||| |||| |||||||||||| ||||||  ||| | | |||||||||||||    
T  9016571 gttaggataattcttctcactttacaagtctgttttgtgaagttatgttaaattcaatcacaaattctaaaaaacacggacttattttgactagtaaagc 9016670  T
Q  112 agggcaatatttcatgtatataattataggttaggatttagcccctcca 160  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  9016671 attgcaatatttcatgtatataattataggttaggatttagcccctcca 9016719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 54394591 - 54394675
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    ||||||||||||||| |||||| || ||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  54394591 aggatgaaaacattttattttaatttttaggaatgaaaatcaaagtttgatatatttatagagacaaaaaatttatttaaccctt 54394675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 16024807 - 16024894
Alignment:
Q  332 tgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||||| |||||| || ||||||||||||    
T  16024807 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggacgaataacttatttaaccct 16024894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 1742055 - 1741971
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||||||||||||||| ||||||||||| |||||||  |||| |||| |||||||||||||||| || |||||  ||||||||    
T  1742055 ttgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 31989890 - 31989801
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    |||||||||||||||| ||  |||| |||| |||||||| ||||  ||| |||||||||||||||  ||||||||| |||||||||||||    
T  31989890 ttgtgaggatgaaaacgttcaatttaattttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaaccctt 31989801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 16024608 - 16024518
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    |||||| ||||||||||||   ||| |||| |||||||  |||| |||| || | ||||||||| ||||||||||| ||||||||||||||    
T  16024608 ttgtgaagatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttattgagacgaaaaacttatttaacccttt 16024518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 25693383 - 25693294
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    |||||||||||||||||  || ||||||||  || |||| |||| |||| | || |||| |||||| ||||||||| |||||||||||||    
T  25693383 ttgtgaggatgaaaacacctcgttttattttataaggaccaaaatcaaaatatgttataattatagggacgaaaaacttatttaaccctt 25693294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 9016755 - 9016787
Alignment:
Q  196 gtgagaaatatgagataataatagctgaagttg 228  Q
    |||||||||||||||||||||||||||||||||    
T  9016755 gtgagaaatatgagataataatagctgaagttg 9016787  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 35105131 - 35105076
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||  |||||||||||    
T  35105131 agggactaaaacgaaaatttgatatatttatagagaccaaaaacatatttaaccct 35105076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 50620600 - 50620650
Alignment:
Q  371 aaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||||||| ||||    
T  50620600 aaaaccaaaatttgatatatttacagagaccaaaaacttatttaactcttt 50620650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 31990147 - 31990220
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaa 404  Q
    |||| |||| ||||| || ||||||| ||| |||||||| ||||  ||| |||||||||||||||| |||||||    
T  31990147 ttgtaaggaggaaaatatctcattttgtttcttagggactaaaattaaaatttgatatatttatagggacgaaa 31990220  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 418
Target Start/End: Original strand, 17947288 - 17947375
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||||||||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||||| || ||||||||||||||||||    
T  17947288 ttgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaaccc 17947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 31792710 - 31792623
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||||||||||||||||||||||||||| ||||  || |||| |||| |||||||||||||||| |||||||||||||||||||||    
T  31792710 ttgtgaggatgaaaacatttcattttattttttagaaactaaaatcaaaatttgatatatttatagggacgaaaaatttatttaaccc 31792623  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 40154646 - 40154723
Alignment:
Q  337 ggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||||||||| ||||||||||| |||| ||| |||| |||| |||||||||||||||| ||||||||| ||||||||    
T  40154646 ggatgaaaacatgtcattttattt-ttagagactaaaatcaaattttgatatatttatagggacgaaaaacttatttaa 40154723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 417
Target Start/End: Complemental strand, 51203307 - 51203221
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    |||||||||||||| ||||  ||||||||| |||||||| |||| |||| || |  |||||||||| ||||||||| ||||||||||    
T  51203307 ttgtgaggatgaaagcattctattttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 36620993 - 36620916
Alignment:
Q  339 atgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||||||| ||||||||||| ||||| || |||| |||| ||| ||||||||||||  |||||||| |||||||||    
T  36620993 atgaaaacatctcattttattttttaggaactaaaatcaaaatttaatatatttatagttacgaaaaacttatttaac 36620916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 15186933 - 15186857
Alignment:
Q  339 atgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    ||||||||||  |||||||||||||| | || |||| |||| |||||||||||| ||| ||||||||| ||||||||    
T  15186933 atgaaaacatgccattttatttgttaagaactaaaatcaaactttgatatatttttagggacgaaaaacttatttaa 15186857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 2479010 - 2478935
Alignment:
Q  342 aaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    ||||||| |||||||| || |||||||| |||| |||| ||  |||||||||||| ||||||||| ||||||||||    
T  2479010 aaaacatctcattttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacc 2478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 41823622 - 41823537
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||| ||||||| ||||||||| | ||| |||  |||| |||| ||||||||||||||   || |||||| ||||||||||||    
T  41823622 tgaggataaaaacatctcattttatcttttaaggattaaaatcaaaatttgatatatttatgaggatgaaaaacttatttaaccct 41823537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 5521526 - 5521590
Alignment:
Q  352 attttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    ||||||||| ||| |||| |||| |||| || | ||||||||||| ||||||||| |||||||||    
T  5521526 attttattttttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 11692237 - 11692153
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||||||||||||||||   ||| |||| |||| ||| |||| |||| || | ||||||||||| || |||||| ||||||||    
T  11692237 ttgtgaggatgaaaacattaagtttaattttttagagactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 19306075 - 19306127
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||| ||||| ||| |||| ||||||||||||||| |||||| ||||||||    
T  19306075 agggactaaaacaaaaatttggtatatttatagagacaaaaaatatatttaac 19306127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 22008398 - 22008454
Alignment:
Q  363 tagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||| ||||| |||| ||||||||||||||| ||| |||||  |||||||||||    
T  22008398 tagggactaaaacaaaaggttgatatatttatagggaccaaaaacatatttaaccct 22008454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 158790 - 158703
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||| |||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||| | |||||||||| |||||||||||    
T  158790 ttgtgtggatgaaaacatctcattttattttttagggaccaaaaccaaaatttgatatatttacatagacgaaaaacttatttaaccc 158703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 417
Target Start/End: Original strand, 15249584 - 15249670
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| |||| |||||||| ||||||| || |||||  ||||||||||    
T  15249584 ttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagcttatttaacc 15249670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 14046545 - 14046482
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttata 395  Q
    ||||| || ||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||    
T  14046545 ttgtggggttgaaaacatttcattttattt-ttagggactaaaatcaaattttgatatatttata 14046482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 23757373 - 23757285
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||| ||||||||||| |||||||  ||||  ||| |||| |||||||||| ||| |||||| | |||| |||||    
T  23757373 ttgtgaggatgaaaacatctcattttattttttagggattaaaattaaaatttgctatatttataaagatgaaaaactgatttgaccct 23757285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 33757954 - 33757869
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    ||||||||||||| |||||| |||| | |  ||| |||| |||| ||| |||||||||||| || |||||| ||||||||||||||    
T  33757954 aggatgaaaacatctcatttcatttttgaaagactaaaatcaaaatttaatatatttatagggatgaaaaacttatttaacccttt 33757869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 22210238 - 22210321
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    ||||||||||||||||  ||||||||||||| |||  |||| |||| || | ||||||||||  || |||||| ||||||||||    
T  22210238 tgaggatgaaaacattctattttatttgttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaacc 22210321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Original strand, 33758173 - 33758208
Alignment:
Q  386 tatatttatagagacgaaaaatttatttaacccttt 421  Q
    |||||||||||||| |||||||||||||||||||||    
T  33758173 tatatttatagagatgaaaaatttatttaacccttt 33758208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 6785834 - 6785888
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||  ||||||||||    
T  6785834 agggactaaaacgaaaatttgatatatttatagagaccaaaaacatatttaaccc 6785888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 23767254 - 23767196
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaa-tttatttaacccttt 421  Q
    |||||| ||||| |||||||||||||||||||| ||| |||||  ||||||||||||||    
T  23767254 agggactaaaacgaaagtttgatatatttatagtgactaaaaacattatttaacccttt 23767196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 22210045 - 22209985
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatt 391  Q
    |||||||||||||||||| ||||||||| | ||||| || |||| |||| |||| ||||||    
T  22210045 ttgtgaggatgaaaacatctcattttatcttttaggaacaaaaatcaaaatttgttatatt 22209985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 37938927 - 37938884
Alignment:
Q  377 aaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||    
T  37938927 aaagtttg-tatatttatagagaccaaaaatatatttaacccttt 37938884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 7630619 - 7630703
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||| ||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||||||||||||||||| ||||||||    
T  7630619 ttgtaaggatgaaaacatctctttttattttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 40972121 - 40972211
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    |||||||||| ||||||||  ||||||||| |||||||| |||| |||| || | ||||||||||| || |||||| ||||||||||||||    
T  40972121 ttgtgaggataaaaacattctattttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaacccttt 40972211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 21034709 - 21034620
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    |||||||| ||||||||| ||||||||||| || ||||| | || |||| |||||||||||||||| ||  ||||| |||||||||||||    
T  21034709 ttgtgagggtgaaaacatctcattttattttttggggactataatcaaaatttgatatatttatagggaacaaaaacttatttaaccctt 21034620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 41863732 - 41863820
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||| |||||||||||  ||| ||  ||||  ||| ||||||||||||| || || |||||| ||||||||||||    
T  41863732 ttgtgaggatgaaaacatctcattttattttatagagattaaaataaaattttgatatatttacagggatgaaaaacttatttaaccct 41863820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 26032334 - 26032249
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||||||||||||||||   ||| |||| |||||||  |||| |||| || | ||||||||||| ||||||||| |||||||||    
T  26032334 ttgtgaggatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 26032249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 40971922 - 40971862
Alignment:
Q  335 gaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttata 395  Q
    |||||||||||||| ||||||||||| |||||||| |||| |||| |||  ||||||||||    
T  40971922 gaggatgaaaacatctcattttattttttagggactaaaatcaaaatttattatatttata 40971862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 9509155 - 9509101
Alignment:
Q  367 gacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    ||||||||| |||  |||| |||||||||||||| |||||| |||||||||||||    
T  9509155 gacgaaaacgaaaagttgacatatttatagagaccaaaaatatatttaacccttt 9509101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 30856376 - 30856452
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatt 412  Q
    |||||||||||||   |||| |||| |||||||  ||||||||| || | ||||||| ||| |||||||||||||||    
T  30856376 aggatgaaaacatcctatttcattttttagggaacaaaaccaaaattcgttatatttttagggacgaaaaatttatt 30856452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 33005134 - 33005224
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgtt-agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    |||||||||||||||| | ||||||||||| || ||||||||||| |||| ||| |||||||||||| ||||||||| |||||||||||||    
T  33005134 ttgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaatttaatatatttatagggacgaaaaacttatttaaccctt 33005224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 18503653 - 18503569
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||||||||||||||| ||||||||||| |||||||  |||| |||| |||||||||||||||  ||||||||| ||| ||||    
T  18503653 ttgtgaggatgaaaacatctcattttattttttagggataaaaatcaaaatttgatatatttataaggacgaaaaacttagttaa 18503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 2147102 - 2147165
Alignment:
Q  343 aaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaa 406  Q
    |||||| ||||||||||| |||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  2147102 aaacatctcattttattttttagggacgaaaactaaaatttaatatattgatagagacgaaaaa 2147165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 14585014 - 14584929
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||| |||||||||||  | |||||||| |||||||| |||| |||| |||  ||||||| ||||||||||||| |||||||||    
T  14585014 ttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac 14584929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 15998884 - 15998799
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||| |||||||||||  | |||||||| |||||||| |||| |||| |||  ||||||| ||||||||||||| |||||||||    
T  15998884 ttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttactatatttttagagacgaaaaaattatttaac 15998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 25245097 - 25245012
Alignment:
Q  332 tgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    ||||| ||||||||||||||||||||| | |||||||  |||| |||| || | ||| ||||||| || |||||| ||||||||||    
T  25245097 tgtgaagatgaaaacatttcattttatattttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaacc 25245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 33998854 - 33998934
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    ||||||| |||| || ||||||||||| |||||||| |||| |||| ||| ||||||||||| |||| ||||| ||||||||    
T  33998854 tgaggataaaaatatctcattttattttttagggactaaaatcaaaatttaatatatttataaagac-aaaaacttatttaa 33998934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 12422651 - 12422599
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||| ||||| ||| |||||||||||||||| ||| |||||| ||||||||    
T  12422651 agggaccaaaacgaaaatttgatatatttatagggaccaaaaatatatttaac 12422599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 36391420 - 36391384
Alignment:
Q  382 ttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  36391420 ttgatatatttatagagactaaaaatatatttaaccc 36391384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 35665587 - 35665676
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    |||||||||||||||||| |||||||| || |||||||| |||| |||| ||||||||  |||||| ||| |||||||||||||||||||    
T  35665587 ttgtgaggatgaaaacatctcattttagtttttagggactaaaatcaaattttgatatgcttatagggacaaaaaatttatttaaccctt 35665676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 12926593 - 12926506
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||||||||||||||  ||||||||||| | ||||||||||| |||| ||  |||||||||||| || |||||| |||||||||||    
T  12926593 ttgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattcaatatatttatagtgatgaaaaacttatttaaccc 12926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 25954750 - 25954835
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||||||||||||||| ||||||||||| ||||  || |||| |||| | ||||||| ||| || | |||||||||||||||||    
T  25954750 ttgtgaggatgaaaacatctcattttattttttagaaactaaaatcaaaatctgatatagttacaggggcgaaaaatttatttaac 25954835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 35665413 - 35665325
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||||   ||| |||| |||||||| |||| |||| || | ||||||||||  ||||||||| ||||||||||||    
T  35665413 ttgtgaggatgaaaacattcactttaattttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccct 35665325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 10373942 - 10373888
Alignment:
Q  365 gggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||| ||||| |||| |||||||||||||| ||||||||||| |||||||||||    
T  10373942 gggactaaaacgaaagattgatatatttataaagacgaaaaatatatttaaccct 10373888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 24895742 - 24895822
Alignment:
Q  339 atgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||  |||||||||  ||||||| |||| |||| |||| ||||||| ||  ||||||||| ||||||||||||    
T  24895742 atgaaaacattcaattttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaaccct 24895822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 27002994 - 27003062
Alignment:
Q  350 tcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||| |||||||| |||| | || ||||| |||||||||| ||||||| | |||||||||||    
T  27002994 tcattttattttttagggactaaaatccaaatttgacatatttatagggacgaaacacttatttaaccc 27003062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 28191735 - 28191822
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||| |||||||||||  ||  ||  |||| |||| ||||||||||||||||| |  ||||| ||||||||||||    
T  28191735 ttgtgaggatgaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatatttataga-aaaaaaaaattatttaaccct 28191822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 578291 - 578237
Alignment:
Q  337 ggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatt 391  Q
    |||||||||||| ||||||||||| |||||||| |||| |||| |||| ||||||    
T  578291 ggatgaaaacatctcattttattttttagggactaaaatcaaaatttgctatatt 578237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 7876443 - 7876529
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||||||||| |||| |||||| |||| |||||||  |||| |||| ||   ||||||||||  ||||||||||||||||||||||    
T  7876443 ttgtgaggatgaacacatctcattt-attt-ttagggattaaaatcaaaattcattatatttataaggacgaaaaatttatttaaccct 7876529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 30956132 - 30956056
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgtt-agggacgaaaaccaaagtttgatatatttatagagacgaaaaattt 409  Q
    ||||||||||||||||| ||||||||| || ||||   ||||| ||| |||| |||||||||||  |||||||||||    
T  30956132 tgaggatgaaaacattttattttattttttaagggcaaaaaacaaaattttgctatatttataggaacgaaaaattt 30956056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 35652090 - 35652177
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||  ||||||| |||||||| |||| ||||  || ||||  ||| |||||||||||||||| || |||||| ||||||||||||    
T  35652090 ttgtgagagtgaaaacttttcattt-attttttagaaactaaaattaaaatttgatatatttatagggatgaaaaacttatttaaccct 35652177  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 4096769 - 4096853
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||| ||||||||||| |||||| |||| |||||||  |||| |||| |||||| ||||||||| ||||||||||||||||||    
T  4096769 ttgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaatttatttaa 4096853  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 1112024 - 1112101
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttattt 413  Q
    ||||||||||||| |||||| |||| |||||||  ||||  ||| | |||||||||||||| ||||||||| ||||||    
T  1112024 aggatgaaaacatctcatttaattttttagggattaaaattaaaatatgatatatttatagggacgaaaaacttattt 1112101  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 33261771 - 33261690
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||||| ||||||||||| |||||||| |||| |||| |||||||| ||||||  ||||||||| |||||||||||    
T  33261771 aggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33261690  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 33281930 - 33281849
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||||| ||||||||||| |||||||| |||| |||| |||||||| ||||||  ||||||||| |||||||||||    
T  33281930 aggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33281849  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 14398280 - 14398361
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    ||||||||||||||| ||||||||||||||||  || |||| |||| ||||||||||||| |  ||||||||| || |||||    
T  14398280 tgaggatgaaaacatctcattttatttgttagaaactaaaatcaaaatttgatatatttacatggacgaaaaacttttttaa 14398361  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 1691383 - 1691295
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||| ||||||||||| ||||||||  | |||||||| |||| |||| ||| || ||| ||||| ||||||||| ||||||||||||    
T  1691383 ttgtgaagatgaaaacatctcattttacattttagggactaaaatcaaattttaatgtatctatagggacgaaaaacttatttaaccct 1691295  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 362741 - 362670
Alignment:
Q  350 tcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    ||||||||||| |||||||  |||| |||| ||| |||||||||||| ||||||||| ||||||||| ||||    
T  362741 tcattttattttttagggattaaaatcaaattttaatatatttatagggacgaaaaacttatttaactcttt 362670  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 27086042 - 27085951
Alignment:
Q  331 ttgtgaggatgaaaacatttca-ttttatttgttagggacgaaaaccaaa-gtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||  |||  |||||||||||||||  ||| ||||  |||||||||||||    
T  27086042 ttgtgaggatgaaaacatctcatttttattttttagggactaaaattaaatttttgatatatttataaggacaaaaatcttatttaaccctt 27085951  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 35789544 - 35789487
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccttt 421  Q
    |||||| ||||| |||  |||| |||||||||||||| |||||| |||||||||||||    
T  35789544 agggactaaaacgaaaagttgacatatttatagagaccaaaaatatatttaacccttt 35789487  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 51489629 - 51489592
Alignment:
Q  382 ttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  51489629 ttgatatatttatagagaccaaaaatatatttaaccct 51489592  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 14398076 - 14397988
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||||   ||| |||| ||||| || |||| |||| || | ||||||||||  || |||||| ||||||||||||    
T  14398076 ttgtgaggatgaaaacattcagtttaattttttaggaactaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccct 14397988  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 27086250 - 27086338
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||||   ||| |||| ||| |||| |||| || | |||| ||||||||||  || |||||| ||||||||||||    
T  27086250 ttgtgaggatgaaaacattcagtttaattttttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaaccct 27086338  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 41064612 - 41064656
Alignment:
Q  371 aaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||| |||| || ||||||||||||||||| ||||||||||||||    
T  41064612 aaaaacaaaattcgatatatttatagagactaaaaatttatttaa 41064656  T

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Target: scaffold0939 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 708 - 797
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctt 420  Q
    |||||| ||||||||||  ||||| ||||| |||||||  ||||  ||| |||| ||||||||||| |||||||||||||||||||||||    
T  708 ttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttatagggacgaaaaatttatttaaccctt 797  T

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