View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1164_low_15 (Length: 388)
Name: NF1164_low_15
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 23071197 - 23071469
Alignment:
| Q |
13 |
aatattgtttcaaccaactcaactaattttactatccaatttaatagaattaaatgggaaagacttaaaaaat-tcaaaatagaaacattagtcataaat |
111 |
Q |
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| T |
23071197 |
aatattgtttcaaccaactcaactaattttactatccaat-------aattaaatgggaaagacttaaaaaaactcaaaatagaaacattagtcacaaat |
23071289 |
T |
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| Q |
112 |
gttatgtcgattgtaatgtttatatttatcttttaataatctcatgattatcaagcatccttgttgcgagaaggaattcgcaggtggaattaagcaaaat |
211 |
Q |
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| T |
23071290 |
ataatgtcgattgtaatgtttatatttatcttttaataatctcatgattatcaagcatccttattgcgagaaggaattcgcaggtggaattaagcaaaat |
23071389 |
T |
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| Q |
212 |
gcaatgtacatagttgcgctgcaatgctcgggaaaatgaagagaattgtatatatcttctaatatgttctaatctatagc |
291 |
Q |
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| T |
23071390 |
gcaatgtacataggtgcactgcaatgctcgggaaaatgaagagaattgtatatatcttctattatgttctaatctatagc |
23071469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 23068837 - 23068669
Alignment:
| Q |
60 |
aattaaatgggaaagacttaaaaaattcaaaatagaaacattagtcataaatgttatgtcgattgtaatgtttatatttatcttttaataatctcatgat |
159 |
Q |
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| T |
23068837 |
aattaaatggtaaaaacttaaaaaattctaaaacgaaacattagtcacaaatgtaatgtcgattgt-atgtttatat----------ataatctcatgat |
23068749 |
T |
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| Q |
160 |
tatcaagcatccttgttgcgagaaggaattcgcaggtggaattaagc-aaaatgcaatgtacatagttgcgctgcaatgc |
238 |
Q |
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| T |
23068748 |
tatcatgtatcctttttgcgagaaggaactcgcaagccaaattaagcaaaaatacaatgtacgtaggtgcattgcaatgc |
23068669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 28722921 - 28722745
Alignment:
| Q |
15 |
tattgtttcaaccaactcaactaattttactatccaatttaatagaattaaatgggaaagacttaaaaaattcaaaatagaaacattagtcataaatgtt |
114 |
Q |
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| T |
28722921 |
tattgtttcaaccgactcaattaattttactagacaattgaatagaattaaatgggaaagtctt--aaaattcacaaaaggaacattactcacaaatgta |
28722824 |
T |
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| Q |
115 |
atgtcgattgtaatgtttatatttatcttttaataatctcatgattatcaa-gcatccttgttgcgagaaggaattcgca |
193 |
Q |
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| T |
28722823 |
atgcagattgt-atgtttatatttatcttttaataataacatgattattaaggtatccttaatgcgagaaggaattcgca |
28722745 |
T |
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