View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1164_low_16 (Length: 383)

Name: NF1164_low_16
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1164_low_16
NF1164_low_16
[»] chr1 (2 HSPs)
chr1 (30-254)||(13411114-13411330)
chr1 (305-356)||(13411012-13411063)
[»] chr8 (1 HSPs)
chr8 (185-246)||(38221692-38221753)
[»] chr3 (4 HSPs)
chr3 (191-239)||(23584043-23584091)
chr3 (191-239)||(23598866-23598914)
chr3 (195-239)||(23575416-23575460)
chr3 (186-246)||(32669299-32669359)
[»] chr7 (4 HSPs)
chr7 (203-246)||(12426814-12426857)
chr7 (186-230)||(6622257-6622301)
chr7 (186-243)||(23223275-23223336)
chr7 (186-243)||(23237355-23237416)
[»] chr2 (1 HSPs)
chr2 (184-246)||(17897869-17897931)
[»] scaffold0954 (1 HSPs)
scaffold0954 (186-243)||(21-82)
[»] chr4 (1 HSPs)
chr4 (191-243)||(48178724-48178776)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 13411330 - 13411114
Alignment:
Q  30 aattagtggtaatgtcattatatcgtctgcaagtggtgcacacttttccataaatataaagtaataactttaatctgtaagaaaactcgtgtaaaataat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13411330 aattagtggtaatgtcattatatcgtctgcaagtggtgcacacttttccataaatataaagtaataactttaatctgtaagaaaactcgtgtaaaataat 13411231  T
Q  130 tcaatgactatgatttataggctccatgtgacaaatgttgataaagctcttggtgtatttgttaagaaatttaaaaatgaaattttattttaaagattgt 229  Q
    ||||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13411230 tcaatgac-------tataggctccatgtgacaaatgttgataaagctctt-gtgtatttgttaagaaatttaaaaatgaaattttattttaaagattgt 13411139  T
Q  230 gcattcaacacattaaatttaaaaa 254  Q
    |||||||||||||||||||||||||    
T  13411138 gcattcaacacattaaatttaaaaa 13411114  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 13411063 - 13411012
Alignment:
Q  305 aaaatatcttcaggacacttattaagatgacccttcataagcgccatcaata 356  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  13411063 aaaatatcttcagaacacttattaagatgacccttcataaacgccatcaata 13411012  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 38221753 - 38221692
Alignment:
Q  185 tatttgttaagaaatttaaaaatgaaattttattttaaagattgtgcattcaacacattaaa 246  Q
    |||||||||| ||||||||||   ||||||||||||||| |||||| |||||||||||||||    
T  38221753 tatttgttaaaaaatttaaaataaaaattttattttaaaaattgtgtattcaacacattaaa 38221692  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 23584091 - 23584043
Alignment:
Q  191 ttaagaaatttaaaaatgaaattttattttaaagattgtgcattcaaca 239  Q
    ||||||||||||||| ||||||||||||||| | |||||| ||||||||    
T  23584091 ttaagaaatttaaaattgaaattttattttagaaattgtgtattcaaca 23584043  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 23598914 - 23598866
Alignment:
Q  191 ttaagaaatttaaaaatgaaattttattttaaagattgtgcattcaaca 239  Q
    ||||||||||||||| ||||||||||||||| | |||||| ||||||||    
T  23598914 ttaagaaatttaaaattgaaattttattttagaaattgtgtattcaaca 23598866  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 23575460 - 23575416
Alignment:
Q  195 gaaatttaaaaatgaaattttattttaaagattgtgcattcaaca 239  Q
    ||||||||||| ||||||||||||||| | |||||| ||||||||    
T  23575460 gaaatttaaaattgaaattttattttagaaattgtgtattcaaca 23575416  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 32669359 - 32669299
Alignment:
Q  186 atttgttaagaaatttaaaaatgaaattttattttaaagattgtgcattcaacacattaaa 246  Q
    ||||||||||||| ||||||| |||||||||||| ||| ||  || ||| |||||||||||    
T  32669359 atttgttaagaaaattaaaaaagaaattttatttcaaaaatgatgtatttaacacattaaa 32669299  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 12426857 - 12426814
Alignment:
Q  203 aaaatgaaattttattttaaagattgtgcattcaacacattaaa 246  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||    
T  12426857 aaaataaaattttattttaaaaattgtgcattcaacatattaaa 12426814  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 6622257 - 6622301
Alignment:
Q  186 atttgttaagaaatttaaaaatgaaattttattttaaagattgtg 230  Q
    ||||||||||||||||||||  ||||||||||||| || ||||||    
T  6622257 atttgttaagaaatttaaaatagaaattttattttgaaaattgtg 6622301  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 23223275 - 23223336
Alignment:
Q  186 atttgttaagaaatttaaaa----atgaaattttattttaaagattgtgcattcaacacatt 243  Q
    ||||||||||||||||||||    | |||| ||||| ||||| |||||||||||||||||||    
T  23223275 atttgttaagaaatttaaaatggaaggaaactttatcttaaaaattgtgcattcaacacatt 23223336  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 23237355 - 23237416
Alignment:
Q  186 atttgttaagaaatttaaaa----atgaaattttattttaaagattgtgcattcaacacatt 243  Q
    ||||||||||||||||||||    | |||| ||||| ||||| |||||||||||||||||||    
T  23237355 atttgttaagaaatttaaaatggaaggaaactttatcttaaaaattgtgcattcaacacatt 23237416  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 17897931 - 17897869
Alignment:
Q  184 gtatttgttaagaaatttaaaaatgaaattttattttaaagattgtgcattcaacacattaaa 246  Q
    ||||||||||| || |||||||   ||||||||| ||||| ||||||||||||||| ||||||    
T  17897931 gtatttgttaaaaagtttaaaatgcaaattttatcttaaaaattgtgcattcaacatattaaa 17897869  T

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Target: scaffold0954 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 21 - 82
Alignment:
Q  186 atttgttaagaaatttaaaa----atgaaattttattttaaagattgtgcattcaacacatt 243  Q
    ||||||||||||||||||||    | |||| ||||| ||||| |||||||||||||||||||    
T  21 atttgttaagaaatttaaaatggaaggaaactttatcttaaaaattgtgcattcaacacatt 82  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 48178724 - 48178776
Alignment:
Q  191 ttaagaaatttaaaaatgaaattttattttaaagattgtgcattcaacacatt 243  Q
    ||||||| |||||||   ||||||||| ||||| |||||||||||||||||||    
T  48178724 ttaagaagtttaaaataaaaattttatcttaaaaattgtgcattcaacacatt 48178776  T

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