View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1164_low_17 (Length: 359)
Name: NF1164_low_17
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_low_17 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 347
Target Start/End: Complemental strand, 13410985 - 13410644
Alignment:
| Q |
3 |
aataattgtataccagtataatataattaaatcaataattgagttccactgcaagtgaaaaatctactgaaaaataaataaattaatcttggcagtggaa |
102 |
Q |
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| T |
13410985 |
aataattgtataccagtataatataattaaatcaataattgagttccactgcaagtgaaaaatctactgaaaaataaattaattaatcttggcagtggaa |
13410886 |
T |
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| Q |
103 |
cacatgattcatgattgcacgttttcaaataaatatgatattaatgggttccagtttcttccatatagcttaagcagaattactttttcactttccacca |
202 |
Q |
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| T |
13410885 |
cacatgattcatgattgcacgttttcaaataaatatgatattaatgggttccagtttgttccatatagcttaagcagaattactttttcactttccacca |
13410786 |
T |
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| Q |
203 |
caaactccactcacaatcacattttttggtcgttaataaattgannnnnnnncttgaagtagtctagtgactaaattcatacatataatgtgtgaagaag |
302 |
Q |
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| T |
13410785 |
caaactccactcacaatcacattttctggtcgttaataaattgatttttt---ttcaagtagtctagtgactaaattcatacatataatgtgtgaagaag |
13410689 |
T |
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| Q |
303 |
ttggcaatccgaaatttaaattctgacccctatacataatatctc |
347 |
Q |
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| T |
13410688 |
ttggcaatctggaatttaaattccgacccctatacataatatctc |
13410644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 13487881 - 13487842
Alignment:
| Q |
184 |
actttttcactttccaccacaaactccactcacaatcaca |
223 |
Q |
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| T |
13487881 |
actttttcactttccaccataaactccactcacaatcaca |
13487842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 13602916 - 13602873
Alignment:
| Q |
112 |
catgattgcacgttttcaaataaatatgatattaatgggttcca |
155 |
Q |
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| T |
13602916 |
catgattgcacattttcaaataaatataatattaatgggttcca |
13602873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 13496409 - 13496329
Alignment:
| Q |
26 |
taattaaatcaataattgagttccactg--caagtgaaaaatctactgaaaaataaataaattaatcttggcagtggaaca |
104 |
Q |
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| T |
13496409 |
taattaaatcaatgattgagttccactaaccgagtgaaaattctacgaaaaaataaataaataaatcttgatagtggaaca |
13496329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 131573 - 131530
Alignment:
| Q |
112 |
catgattgcacgttttcaaataaatatgatattaatgggttcca |
155 |
Q |
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| T |
131573 |
catgattgcacattttcaaataaatataatattaatgggttcca |
131530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 20799 - 20835
Alignment:
| Q |
96 |
agtggaacacatgattcatgattgcacgttttcaaat |
132 |
Q |
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| T |
20799 |
agtggatcacatgattcatgattgcacattttcaaat |
20835 |
T |
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