View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1164_low_20 (Length: 320)
Name: NF1164_low_20
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 43341678 - 43341398
Alignment:
| Q |
11 |
gatgaaggtttgttcacttgtattgtattggtgtattagtcgcaatttggtgccttgtgttctttattagtatctatcattgtgaatgtgaaatttgcaa |
110 |
Q |
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| T |
43341678 |
gatgaaggtttgttcacttgtattgtattggtgtattagtcgcaatttggtgccttgtgttctttattagtatctatcattgtgaatgtgaaatttgcaa |
43341579 |
T |
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| Q |
111 |
actttgtagttcttcgattcaagtcttatatgccttgtgcttgaatcaagaaaattaatatattttgctgtttcaaaagaaaaaatgatgaacaattttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43341578 |
actttgtagttcttcgattcaagtcttatatgccttgtgcttgaatcaagaaaattaatatattttgctgtttcaaaagaaaaaatgatgagcaattttt |
43341479 |
T |
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| Q |
211 |
taacctagaaatgatttcaatgcaggagccaaagttgccagattattcaaaccggaaaatgaatccaaaaacaagacaaac |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43341478 |
taacctagaaatgatttcaatgcaggagccaaagttgccagattattcaaaccggaaaatgaatccaaaaacaagacaaac |
43341398 |
T |
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