View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1164_low_21 (Length: 313)
Name: NF1164_low_21
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_low_21 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 29 - 313
Target Start/End: Original strand, 7623587 - 7623870
Alignment:
| Q |
29 |
acgtacaaccgtaagtgggcggtcattaggtctggtgttttcaattttgtcatgtcgattcaggtttctatcgttggcaggtacatcctccaacctaaga |
128 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
7623587 |
acgtacaaccgtaagtgggtggtgattaggtcttgtgttttcaattttgtcatgtcgattcaggtttctgtcgttggcgggtacatcctccaacctaaga |
7623686 |
T |
|
| Q |
129 |
ccgtacaacggtaatcacgtagttggatatgtcaaaacagactcaactagaactataaacataagtagagtttataattataaatgcacacaagaagttt |
228 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623687 |
ccgtaca-cggtaatcacgtagttggatatatcaaaacagactcaactagaactataaacataagtagagtttataattataaatgcacacaagaagttt |
7623785 |
T |
|
| Q |
229 |
tggtaggtaaagaaaataagcattactcactagaaaacttatagttgcaagctcaactaatacaatttcatgcagaatcaaactc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623786 |
tggtaggtaaagaaaataagcattactcactagaaaacttatagttgcaagctcaactaatacaatttcatgcagaatcaaactc |
7623870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 6849139 - 6849078
Alignment:
| Q |
252 |
tactcactagaaaacttatagttgcaagctcaactaatacaatttcatgcagaatcaaactc |
313 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| | |||||||||| | |||||||||| |
|
|
| T |
6849139 |
tactcactagaagacttttagttgcaaactcaacttacacaatttcataaataatcaaactc |
6849078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University