View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1164_low_26 (Length: 265)
Name: NF1164_low_26
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 7623855 - 7624102
Alignment:
| Q |
1 |
atgcagaatcaaactcaactaccaatatcataactgatgcaaaactagcacaagattgcaaaacctgtaaaggaaaaaatagaggataagtaattaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7623855 |
atgcagaatcaaactcaactaccaatatcataactgatgcaaaactagcacaagattgcaaaacctctaaaggaaaaaatagaggataagtaattaacat |
7623954 |
T |
|
| Q |
101 |
tgcttaaacatcatatatcctaaacgtaagcaccaaatgaacgtgatgaaacttttaccaccatctaatgaacatgagaataaaaacaaaagtaagcacc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623955 |
tgcataaacatcatatatcctaaacgtaagcaccaaatgaatgtgatgaaacttttaccaccatctaatgaacatgagaataaaaacaaaagtaagcacc |
7624054 |
T |
|
| Q |
201 |
aaatttataagacaccaagtaacaattaagaagcaatgatacttaaatacctatga |
256 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
7624055 |
aaatttataagacacc--------attaagaagcaatgattcttaaatacctatga |
7624102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University