View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1164_low_4 (Length: 608)
Name: NF1164_low_4
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 13 - 579
Target Start/End: Original strand, 32553852 - 32554418
Alignment:
| Q |
13 |
aatatcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32553852 |
aatatcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttct |
32553951 |
T |
|
| Q |
113 |
cactatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagaacaatttgatttctcttctgtgcagcctcatcatgttca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32553952 |
cactatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagagcaatttgatttctcttctgtacagcctcatcatgttca |
32554051 |
T |
|
| Q |
213 |
acttacagcatgttcatctgttgatgggttttcgcagtatcataatccgaatgattcagttgcacctcttatgggagctcccttatcattaccatctgtt |
312 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32554052 |
acttaccgcatgttcatccgttgatgggttttcgcagtatcataatccaaatgattcagttgcacctcttatgggagctcccttatcattaccatctgtt |
32554151 |
T |
|
| Q |
313 |
tttgaagaggattgcattacttctgtaccttcttatgttcctttgaacccttcttctccttcttgcaattatcttggtcctgccggcatggcggcataca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32554152 |
tttgaagaggattgcattacttctgtaccttcttatgttcctttgaacccttcttctccttcttgcaattatcttggtcctgccggtatggcggcataca |
32554251 |
T |
|
| Q |
413 |
tgcctaatggttctcttactactgccttgtctactgatagttctggtttgtttggaggaaatatggtttttagttctgaaattcagacacaagaacttga |
512 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32554252 |
tgcctaatggttctcttaccactgctttgtctactgatagttctggtttgtttggtggaaatatggtttttggttctgaaattcagacacaagaacttga |
32554351 |
T |
|
| Q |
513 |
ttatcaaggagataatggtagaatttattgtcctgatcctattcagagggtgtttaaccctcctgac |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32554352 |
ttatcaaggagataatggtagaatttattgtcctgatcctattcagagggtgtttaaccctcctgac |
32554418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 16921253 - 16921324
Alignment:
| Q |
57 |
tatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttctcactatcaccatcttt |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || || ||||||||| || ||||| |||||| |
|
|
| T |
16921253 |
tatctttgattcacaagaagatcttgacaatgacatttcagcttctatagatttcacatcatcacaatcttt |
16921324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 543
Target Start/End: Original strand, 16921639 - 16921697
Alignment:
| Q |
485 |
gttctgaaattcagacacaagaacttgattatcaaggagataatggtagaatttattgt |
543 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||| || |||||| ||||||||||| |
|
|
| T |
16921639 |
gttctgaaatgcagacacaagatttggattatcaaggtgaaaatggtggaatttattgt |
16921697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University